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缺血性卒中中关键铜稳态基因与炎症机制:一项生物信息学与实验研究

Key copper homeostasis genes and inflammatory mechanisms in ischemic stroke: A bioinformatics and experimental study.

作者信息

Shi Ting, Wang Zhifeng, Yang Jiao, He Pengfen, Tian Daman, Lan Junfeng, Xu Shuangfeng, Yang Aiming, Xing Liwei, Xi Yujiang, Wang Jian

机构信息

The First Clinical Medical College, Yunnan University of Chinese Medicine, Kunming, China.

College of Acupuncture and Massage, Yunnan University of Chinese Medicine, Kunming, China.

出版信息

Funct Integr Genomics. 2025 Sep 10;25(1):189. doi: 10.1007/s10142-025-01692-0.

Abstract

Ischemic stroke (IS) has high morbidity/mortality with limited treatments. This study screened core copper homeostasis-related genes in IS and validated their function as precise intervention targets. Human IS gene chip data were retrieved from GEO, and copper homeostasis genes from multiple databases. After data correction/normalization, IS differentially expressed genes (DEGs) were identified and intersected with copper genes. DAVID for GO/KEGG enrichment, STRING for PPI network, CytoHubba for key genes, and ROC curves for diagnostic value. MCAO rat models were established; after 14-day rearing, protein expression was validated via relevant assays. 1,425 IS DEGs and 2,610 copper genes intersected to 235 genes, enriched in inflammatory response, innate immunity, and TNF/NOD-like/Toll-like receptor pathways. Key genes HIF-1α, TNF, TLR4, IL-1β had IS diagnostic AUC 0.70-0.80. MCAO rats showed worse neurological deficits, larger infarcts, neuronal damage, brain copper accumulation, and upregulated key genes linked to neuroinflammation, BBB disruption, and neuronal injury. Bioinformatics and animal studies revealed copper homeostasis imbalance-related genes mediate inflammation, oxidative stress, and mitochondrial regulation, supporting the "copper accumulation-inflammation-oxidative stress" cascade. These genes may be novel IS targets. Further study on dynamic expression across ischemic time windows/brain regions and interactions with other cell death modes is needed.

摘要

缺血性中风(IS)的发病率/死亡率很高,而治疗方法有限。本研究筛选了IS中与铜稳态相关的核心基因,并验证了它们作为精确干预靶点的功能。从GEO数据库中检索人类IS基因芯片数据,并从多个数据库中获取铜稳态基因。经过数据校正/归一化后,鉴定出IS差异表达基因(DEG),并与铜基因进行交集分析。使用DAVID进行GO/KEGG富集分析,STRING构建PPI网络,CytoHubba筛选关键基因,并用ROC曲线评估诊断价值。建立了大脑中动脉闭塞(MCAO)大鼠模型;饲养14天后,通过相关检测验证蛋白表达。1425个IS差异表达基因与2610个铜基因相交,得到235个基因,这些基因富集于炎症反应、固有免疫以及TNF/NOD样/Toll样受体途径。关键基因HIF-1α、TNF、TLR4、IL-1β在IS诊断中的AUC为0.70 - 0.80。MCAO大鼠表现出更严重的神经功能缺损、更大的梗死灶、神经元损伤、脑铜蓄积,以及与神经炎症、血脑屏障破坏和神经元损伤相关的关键基因上调。生物信息学和动物研究表明,与铜稳态失衡相关的基因介导炎症、氧化应激和线粒体调节,支持“铜蓄积 - 炎症 - 氧化应激”级联反应。这些基因可能是IS的新靶点。需要进一步研究其在缺血时间窗/脑区的动态表达以及与其他细胞死亡模式的相互作用。

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