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蜂房哈夫尼菌中天冬氨酸酶的酸碱化学机制。

Acid-base chemical mechanism of aspartase from Hafnia alvei.

作者信息

Yoon M Y, Thayer-Cook K A, Berdis A J, Karsten W E, Schnackerz K D, Cook P F

机构信息

Department of Biochemistry and Molecular Biology, University of North Texas Health Science Center, Fort Worth 76107, USA.

出版信息

Arch Biochem Biophys. 1995 Jun 20;320(1):115-22. doi: 10.1006/abbi.1995.1348.

Abstract

An acid-base chemical mechanism is proposed for Hafnia alvei aspartase in which a proton is abstracted from C-3 of the monoanionic form of L-aspartate by an enzyme general base with a pK of 6.3-6.6 in the absence and presence of Mg2+. The resulting carbanion is presumably stabilized by delocalization of electrons into the beta-carboxyl with the assistance of a protonated enzyme group in the vicinity of the beta-carboxyl. Ammonia is then expelled with the assistance of a general acid group that traps an initially expelled NH3 as the final NH4+ product. In agreement with the function of the general acid group, potassium, an analog of NH4+, binds optimally when the group is unprotonated. The pK for the general acid is about 7 in the absence of Mg2+, but is increased by about a pH unit in the presence of Mg2+. Since the same pK values are observed in the pKi(succinate) and V/K pH profile, both enzyme groups must be in their optimum protonation state for efficient binding of reactant in the presence of Mg2+. At the end of a catalytic cycle, both the general base and general acid groups are in a protonation state opposite that in which they started when aspartate was bound. The presence of Mg2+ causes a pH-dependent activation of aspartase exhibited as a partial change in the V and V/Kasp pH profiles. When the aspartase reaction is run in D2O to greater than 50% completion no deuterium is found in the remaining aspartate, indicating that the site is inaccessible to solvent during the catalytic cycle.

摘要

提出了一种关于蜂房哈夫尼亚菌天冬氨酸酶的酸碱化学机制,即在不存在和存在Mg2+的情况下,一种pK为6.3 - 6.6的酶通用碱从L-天冬氨酸单阴离子形式的C-3位夺取一个质子。由此产生的碳负离子可能通过电子离域到β-羧基而得到稳定,这一过程借助于β-羧基附近一个质子化的酶基团。然后,在一个通用酸基团的协助下,氨被排出,该通用酸基团将最初排出的NH3捕获为最终的NH4+产物。与通用酸基团的功能一致,NH4+的类似物钾在该基团未质子化时结合最佳。在不存在Mg2+的情况下,通用酸的pK约为7,但在存在Mg2+的情况下增加了约一个pH单位。由于在pKi(琥珀酸)和V/K pH曲线中观察到相同的pK值,在存在Mg2+的情况下,两个酶基团都必须处于其最佳质子化状态才能有效结合反应物。在催化循环结束时,通用碱基团和通用酸基团的质子化状态与结合天冬氨酸时的起始状态相反。Mg2+的存在导致天冬氨酸酶呈现pH依赖性激活,表现为V和V/Kasp pH曲线的部分变化。当天冬氨酸酶反应在D2O中进行至超过50%完成时,在剩余的天冬氨酸中未发现氘,这表明在催化循环期间该位点对溶剂不可达。

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