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通过结核分枝杆菌复合群热解质谱的人工神经网络分析快速鉴定菌种

Rapid identification of species within the Mycobacterium tuberculosis complex by artificial neural network analysis of pyrolysis mass spectra.

作者信息

Freeman R, Goodacre R, Sisson P R, Magee J G, Ward A C, Lightfoot N F

机构信息

Department of Microbiology, The Medical School, Newcastle-upon-Tyne.

出版信息

J Med Microbiol. 1994 Mar;40(3):170-3. doi: 10.1099/00222615-40-3-170.

Abstract

An artificial neural network (ANN) was trained to distinguish between Mycobacterium tuberculosis and M. bovis with averaged pyrolysis mass spectra from duplicate subcultures of four strains of each of these species, each pyrolysed in triplicate. Once trained, the ANN was interrogated with spectrum data from the original organisms (the "training set") and from 26 other mycobacterial isolates (the "challenge set") of the M. tuberculosis complex (MTBC). Eight strains of M. bovis and 13 of M. tuberculosis, whether sensitive or variously resistant to antituberculosis drugs, were identified in agreement with conventional identification. Four strains of "M. africanum" were identified as M. bovis. Of two atypical M. tuberculosis strains from South India, one was identified as M. tuberculosis and the other as M. bovis. Six strains of BCG proved heterogeneous; two gave equivocal identifications, three were identified as M. bovis and one was identified as M. tuberculosis.

摘要

使用来自每种细菌四个菌株的重复传代培养物的平均热解质谱对人工神经网络(ANN)进行训练,以区分结核分枝杆菌和牛分枝杆菌,每种培养物均进行三次热解。训练完成后,使用来自结核分枝杆菌复合群(MTBC)原始菌株(“训练集”)和其他26种分枝杆菌分离株(“挑战集”)的光谱数据对人工神经网络进行测试。与传统鉴定结果一致,鉴定出8株牛分枝杆菌和13株结核分枝杆菌,这些菌株对抗结核药物敏感或具有不同程度的耐药性。4株“非洲分枝杆菌”被鉴定为牛分枝杆菌。来自印度南部的2株非典型结核分枝杆菌菌株,一株被鉴定为结核分枝杆菌,另一株被鉴定为牛分枝杆菌。6株卡介苗表现出异质性;2株鉴定结果不明确,3株被鉴定为牛分枝杆菌,1株被鉴定为结核分枝杆菌。

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