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一种计算蛋白质构象的统计学方法。1. 理论。

A statistical approach to the calculation of conformation of proteins. 1. Theory.

作者信息

Crippen G M

出版信息

Macromolecules. 1977 Jan-Feb;10(1):21-5. doi: 10.1021/ma60055a003.

Abstract

A quantitative theory is presented for calculating the folding of a polymer, especially as applied to the renaturation of globular proteins. The theory applies to both thermodynamically and kinetically determined processes, so that not only can the equilibrium result be calculated but also the time course of folding. Since it is not automatically assumed that the folding will result in a single "native" conformation, it is possible to conclude that the polymer will exist as a random coil under appropriate conditions. A Monte Carlo method for applications is discussed in detail, and a very simple example is presented.

摘要

提出了一种用于计算聚合物折叠的定量理论,尤其适用于球状蛋白质的复性。该理论适用于热力学和动力学确定的过程,因此不仅可以计算平衡结果,还可以计算折叠的时间进程。由于没有自动假定折叠会导致单一的“天然”构象,所以可以得出结论,在适当条件下聚合物将以无规线团的形式存在。详细讨论了一种应用的蒙特卡罗方法,并给出了一个非常简单的例子。

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