Ray W J, Post C B, Liu Y, Rhyu G I
Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907.
Biochemistry. 1993 Jan 12;32(1):48-57. doi: 10.1021/bi00052a008.
An electron density map of the reactive, Cd2+ form of crystalline phosphoglucomutase from X-ray diffraction studies shows that the enzymic phosphate donates a nonbridging oxygen to the ligand sphere of the bound metal ion, which appears to be tetracoordinate. 31P and 113Cd NMR spectroscopy are used to assess changes in the properties of bound Cd2+ produced by substrate/product and by substrate/product analog inhibitors. The approximately 50 ppm downfield shift of the 113Cd resonance on formation of the complex of dephosphoenzyme and glucose 1,6-bisphosphate is associated with the initial sugar-phosphate binding step and likely involves a change in the geometry of the coordinating ligands. This interpretation is supported by spectral studies involving various complexes of the active Co2+ and Ni(2+)-enzyme. In addition, there is a loss of the 31P-113Cd J coupling that characterizes the monophosphate complexes of the Cd2+ enzyme either during or immediately after the PO3- transfer step that produces the bisphosphate complex, indicating a further change at the metal binding site. The implications of these observations with respect to the PO3- transfer process in the phosphoglucomutase reaction are considered. The apparent plasticity of the ligand sphere of the active site metal ion in this system may allow a single metal ion to act as a chaperone for a nonbridging oxygen during PO3- transfer or to allow a change in metal ion coordination during catalysis. A general NMR line shape/chemical-exchange analysis for evaluating binding in protein-ligand systems when exchange is intermediate to fast on the NMR time scale is described. Its application to the present system involves multiple exchange sites that depend on a single binding rate, thereby adding further constraints to the analysis.
通过X射线衍射研究得到的结晶磷酸葡萄糖变位酶的活性Cd2+形式的电子密度图表明,酶促磷酸基团向结合的金属离子的配体球提供一个非桥连氧,该金属离子似乎是四配位的。31P和113Cd核磁共振光谱用于评估底物/产物以及底物/产物类似物抑制剂对结合的Cd2+性质的影响。脱磷酸酶与葡萄糖1,6-二磷酸形成复合物时113Cd共振峰大约50 ppm的向低场位移与最初的糖-磷酸结合步骤有关,可能涉及配位配体几何结构的变化。涉及活性Co2+和Ni(2+)-酶的各种复合物的光谱研究支持了这一解释。此外,在产生双磷酸复合物的PO3-转移步骤期间或之后,表征Cd2+酶单磷酸复合物的31P-113Cd J耦合消失,这表明金属结合位点发生了进一步变化。考虑了这些观察结果对磷酸葡萄糖变位酶反应中PO3-转移过程的影响。该系统中活性位点金属离子配体球的明显可塑性可能允许单个金属离子在PO3-转移过程中作为非桥连氧的伴侣,或者在催化过程中允许金属离子配位发生变化。描述了一种用于评估蛋白质-配体系统中结合情况的通用核磁共振线形/化学交换分析方法,该交换在核磁共振时间尺度上处于中间到快速交换状态。其在本系统中的应用涉及多个依赖于单一结合速率的交换位点,从而为分析增加了更多限制。