Betzel C, Dauter Z, Genov N, Lamzin V, Navaza J, Schnebli H P, Visanji M, Wilson K S
European Molecular Biology Laboratory, DESY, Hamburg, Germany.
FEBS Lett. 1993 Feb 15;317(3):185-8. doi: 10.1016/0014-5793(93)81273-3.
The inhibition of serine proteinases by both synthetic and natural inhibitors has been widely studied. Eglin c is a small thermostable protein isolated from the leech, Hirudo medicinalis. Eglin c is a potent serine proteinase inhibitor. The three-dimensional structure of native eglin and of its complexes with a number of proteinases are known. We here describe the crystal structure of hydrolysed eglin not bound to a proteinase. The body of the eglin has a conformation remarkably similar to that in the known complexes with proteinases. However, the peptide chain has been cut at the 'scissile' bond between residues 45 and 46, presumed to result from the presence of subtilisin DY in the crystallisation sample. The residues usually making up the inhibiting loop of eglin take up a quite different conformation in the nicked inhibitor leading to stabilising contacts between neighbouring molecules in the crystal. The structure was solved by molecular replacement techniques and refined to a final R-factor of 14.5%.
合成抑制剂和天然抑制剂对丝氨酸蛋白酶的抑制作用已得到广泛研究。水蛭素c是从药用水蛭 Hirudo medicinalis 中分离出的一种热稳定小蛋白。水蛭素c是一种有效的丝氨酸蛋白酶抑制剂。天然水蛭素及其与多种蛋白酶形成的复合物的三维结构已为人所知。我们在此描述未与蛋白酶结合的水解水蛭素的晶体结构。水蛭素的主体构象与已知的与蛋白酶形成的复合物中的构象非常相似。然而,肽链在残基45和46之间的“可裂解”键处被切断,推测这是由于结晶样品中存在枯草杆菌蛋白酶DY所致。在有切口的抑制剂中,通常构成水蛭素抑制环的残基呈现出截然不同的构象,从而导致晶体中相邻分子之间形成稳定接触。该结构通过分子置换技术解析,最终精修后的R因子为14.5%。