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体内蛋白质 - DNA 相互作用的表征方法。

Approaches to characterize protein-DNA interactions in vivo.

作者信息

Saluz H P, Jost J P

机构信息

IRBM, Roma, Italy.

出版信息

Crit Rev Eukaryot Gene Expr. 1993;3(1):1-29.

PMID:8439708
Abstract

With the availability of direct genomic footprinting techniques the study of native genomes has been greatly facilitated. This review provides an overview of the techniques involved and gives also a description of the mode of action of different DNA modifying agents which can be used for such methods. These include exonuclease III, deoxyribonuclease, DNase I, micrococcal nuclease, dimethyl sulfate, diethyl sulfate, ethyl methanesulphonate, ethylnitrosourea, diethylpyrocarbonate, bromoacetaldehyde, potassium permanganate, osmium tetroxide, methidiumpropyl-EDTA-iron(II), formaldehyde, psoralen, 1,10 phenanthroline-copper and UV light. We also describe the limitations of the currently existing techniques and give some potential developments.

摘要

随着直接基因组足迹技术的出现,天然基因组的研究得到了极大的促进。本综述概述了所涉及的技术,并描述了可用于此类方法的不同DNA修饰剂的作用模式。这些修饰剂包括核酸外切酶III、脱氧核糖核酸酶、DNase I、微球菌核酸酶、硫酸二甲酯、硫酸二乙酯、甲磺酸乙酯、乙基亚硝基脲、焦碳酸二乙酯、溴乙醛、高锰酸钾、四氧化锇、甲基丙基-EDTA-铁(II)、甲醛、补骨脂素、1,10-菲咯啉-铜和紫外线。我们还描述了现有技术的局限性,并给出了一些潜在的发展方向。

相似文献

1
Approaches to characterize protein-DNA interactions in vivo.体内蛋白质 - DNA 相互作用的表征方法。
Crit Rev Eukaryot Gene Expr. 1993;3(1):1-29.
2
Comparison of different footprinting methodologies for detecting binding sites for a small ligand on DNA.用于检测小分子配体在DNA上结合位点的不同足迹法的比较。
J Biomol Struct Dyn. 1995 Feb;12(4):869-98. doi: 10.1080/07391102.1995.10508782.
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In vivo footprinting: studies of protein--DNA interactions in gene regulation.体内足迹法:基因调控中蛋白质与DNA相互作用的研究。
Bioessays. 1989 Nov;11(5):152-5. doi: 10.1002/bies.950110510.
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Chemical and photochemical probing of DNA complexes.DNA复合物的化学与光化学探测
J Mol Recognit. 1990 Feb;3(1):1-25. doi: 10.1002/jmr.300030102.
5
Footprinting DNA-protein interactions in native polyacrylamide gels by chemical nucleolytic activity of 1,10-phenanthroline-copper.利用1,10-菲咯啉-铜的化学核酸酶活性在天然聚丙烯酰胺凝胶中对DNA-蛋白质相互作用进行足迹分析
Methods Mol Biol. 2009;543:163-99. doi: 10.1007/978-1-60327-015-1_13.
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In vivo footprinting using N-ethyl,N-nitrosourea: improved resolution of the DNA-protein interactions in the human gamma-globin gene promoter region.
Anal Biochem. 1997 Dec 1;254(1):1-8. doi: 10.1006/abio.1997.2403.
7
Footprinting with UV irradiation and LMPCR.紫外线照射与连接介导的PCR足迹法
Methods. 1997 Feb;11(2):189-96. doi: 10.1006/meth.1996.0405.
8
Genomic footprinting of Drosophila embryo nuclei by linker tag selection LM-PCR.通过接头标签选择LM-PCR对果蝇胚胎细胞核进行基因组足迹分析。
Methods. 1997 Feb;11(2):171-9. doi: 10.1006/meth.1996.0403.
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Sequence-specific DNA binding of the phage Mu C protein: footprinting analysis reveals altered DNA conformation upon protein binding.噬菌体Mu C蛋白的序列特异性DNA结合:足迹分析揭示了蛋白质结合后DNA构象的改变。
J Mol Biol. 1996 Jul 5;260(1):22-33. doi: 10.1006/jmbi.1996.0379.
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Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment.通过基因组富集的序列标签分析绘制大型基因组中的DNA-蛋白质相互作用图谱。
Nat Methods. 2005 Jan;2(1):47-53. doi: 10.1038/nmeth726. Epub 2004 Dec 21.

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