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2
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Fourier transform infrared double-flash experiments resolve bacteriorhodopsin's M1 to M2 transition.傅里叶变换红外双闪光实验解析了细菌视紫红质从M1到M2的转变。
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Structural changes due to the deprotonation of the proton release group in the M-photointermediate of bacteriorhodopsin as revealed by time-resolved FTIR spectroscopy.时间分辨傅里叶变换红外光谱揭示的细菌视紫红质M光中间体中质子释放基团去质子化引起的结构变化。
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Two groups control light-induced Schiff base deprotonation and the proton affinity of Asp85 in the Arg82 his mutant of bacteriorhodopsin.两组控制光诱导席夫碱去质子化和 Arg82His 突变菌紫质中 Asp85 的质子亲和力。
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Connectivity of the retinal Schiff base to Asp85 and Asp96 during the bacteriorhodopsin photocycle: the local-access model.细菌视紫红质光循环过程中视网膜席夫碱与Asp85和Asp96的连接性:局部可及模型
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The photophobic receptor from Natronobacterium pharaonis: temperature and pH dependencies of the photocycle of sensory rhodopsin II.来自嗜盐栖热放线菌的畏光受体:感官视紫红质II光循环的温度和pH依赖性
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本文引用的文献

1
Low temperature FTIR study of the Schiff base reprotonation during the M-to-bR backphotoreaction: Asp 85 reprotonates two distinct types of Schiff base species at different temperatures.低温傅里叶变换红外光谱研究 M 至 bR 后向光反应中的席夫碱质子化:天冬氨酸 85 在不同温度下质子化两种不同类型的席夫碱物种。
Biophys J. 1992 Dec;63(6):1643-53. doi: 10.1016/S0006-3495(92)81757-5.
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Influence of an electrical potential on the charge transfer kinetics of bacteriorhodopsin.电化势对菌紫质电荷转移动力学的影响。
Biophys J. 1990 Sep;58(3):653-63. doi: 10.1016/S0006-3495(90)82408-5.
3
Light-induced currents from oriented purple membrane: I. Correlation of the microsecond component (B2) with the L-M photocycle transition.光诱导的定向紫膜电流:I. 微秒成分(B2)与 L-M 光循环跃迁的相关性。
Biophys J. 1990 May;57(5):943-50. doi: 10.1016/S0006-3495(90)82614-X.
4
Distributed kinetics of the charge movements in bacteriorhodopsin: evidence for conformational substates.细菌视紫红质中电荷运动的分布式动力学:构象亚基的证据。
Biophys J. 1988 Apr;53(4):623-33. doi: 10.1016/S0006-3495(88)83141-2.
5
Nonlinear voltage dependence of the light-driven proton pump current of bacteriorhodopsin.细菌视紫红质光驱动质子泵电流的非线性电压依赖性。
Biophys J. 1988 Apr;53(4):617-21. doi: 10.1016/S0006-3495(88)83140-0.
6
The back photoreaction of the M intermediate in the photocycle of bacteriorhodopsin: mechanism and evidence for two M species.细菌视紫红质光循环中M中间体的反向光反应:两种M物种的机制与证据
Photochem Photobiol. 1992;56(6):1041-7. doi: 10.1111/j.1751-1097.1992.tb09727.x.
7
Kinetic isotope effects reveal an ice-like and a liquid-phase-type intramolecular proton transfer in bacteriorhodopsin.动力学同位素效应揭示了细菌视紫红质中类似冰和液相型的分子内质子转移。
FEBS Lett. 1996 Dec 2;398(2-3):333-6. doi: 10.1016/s0014-5793(96)01254-9.
8
Electrostatic coupling between retinal isomerization and the ionization state of Glu-204: a general mechanism for proton release in bacteriorhodopsin.视网膜异构化与Glu-204电离状态之间的静电耦合:细菌视紫红质中质子释放的一般机制。
Biophys J. 1996 Sep;71(3):1165-71. doi: 10.1016/S0006-3495(96)79320-7.
9
Arginine-82 regulates the pKa of the group responsible for the light-driven proton release in bacteriorhodopsin.精氨酸-82调节负责细菌视紫红质中光驱动质子释放的基团的pKa。
Biophys J. 1996 Aug;71(2):1011-23. doi: 10.1016/S0006-3495(96)79302-5.
10
A large photolysis-induced pKa increase of the chromophore counterion in bacteriorhodopsin: implications for ion transport mechanisms of retinal proteins.细菌视紫红质中生色团抗衡离子的光解诱导pKa大幅增加:对视网膜蛋白离子转运机制的启示
Biophys J. 1996 Feb;70(2):939-47. doi: 10.1016/S0006-3495(96)79637-6.

来自对M中间体光逆转进行的时间分辨光电压和闪光光解实验的嗜盐菌视紫红质再质子化开关第一阶段的证据。

Evidence for the first phase of the reprotonation switch of bacteriorhodopsin from time-resolved photovoltage and flash photolysis experiments on the photoreversal of the M-intermediate.

作者信息

Dickopf S, Heyn M P

机构信息

Biophysics Group, Department of Physics, Freie Universität Berlin, Germany.

出版信息

Biophys J. 1997 Dec;73(6):3171-81. doi: 10.1016/S0006-3495(97)78343-7.

DOI:10.1016/S0006-3495(97)78343-7
PMID:9414229
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1181220/
Abstract

The kinetics of the photoreversal reaction of the M-intermediate of bacteriorhodopsin (bR) was investigated by time-resolved optical absorption spectroscopy and photovoltage measurements using double-flash excitation (a green flash (532 nm) followed by a blue flash (400 nm) after a variable delay). The sign of the photovoltage and the 1H/2H kinetic isotope effect indicate that the Schiff base is reprotonated by a group between the Schiff base and the extracellular surface, probably Asp85. Analysis of the kinetic data shows that the charge movement in 150 mM KCl at 12 degrees C is characterized by two components with time constants of approximately 100 ns and approximately 600 ns, respectively, which are independent of the delay time between the flashes and the pH. The amplitudes of the fast and slow components depend on the delay and the pH. The slower component starts to contribute to the charge movement only after delays longer than 100 micros, is absent at low pH, and increases in amplitude with a pKa of approximately 6. Because the proton release group deprotonates after 70-100 micros and has a transient pKa of 5.8, these results suggest the following assignment: the fast and the combination of fast and slow components represent photoreversal from two M states, with the release group protonated and deprotonated, respectively. The slow phase of the photoreversal starts from a state with the release group deprotonated, and with the pK of Asp85 elevated, and is probably due to the restoration of the pK of Asp85 to its initial low value. This provides further evidence for coupling between the pK's of Asp85 and the release group and suggests that proton release is the first step in the reprotonation switch. At alkaline pH the amplitude of the electrical signal from the back photoreaction decreases with an apparent pK of 8, without a corresponding decrease in the amount of M. At neutral pH the movement of the positively charged guanidinium group of Arg82 from a position near the release group on the surface to Asp85 makes a substantial contribution to the electrical photoreversal amplitude. Above the pK of the release group in the unphotolysed state (approximately 8), Arg82 stays near the surface, leading to a corresponding signal reduction.

摘要

利用双闪光激发(一个绿色闪光(532纳米),随后在可变延迟后施加一个蓝色闪光(400纳米))的时间分辨光吸收光谱和光电压测量,研究了细菌视紫红质(bR)的M中间体的光逆转反应动力学。光电压的符号和1H/2H动力学同位素效应表明,席夫碱被席夫碱和细胞外表面之间的一个基团重新质子化,可能是天冬氨酸85。动力学数据分析表明,在12摄氏度的150 mM KCl中,电荷移动的特征是两个分量,时间常数分别约为100纳秒和约600纳秒,这两个分量与闪光之间的延迟时间和pH无关。快速和慢速分量的幅度取决于延迟时间和pH。较慢的分量仅在延迟超过100微秒后才开始对电荷移动有贡献,在低pH时不存在,并且幅度随着约为6的pKa增加。由于质子释放基团在70 - 100微秒后去质子化,并且具有5.8的瞬态pKa,这些结果表明以下归属:快速以及快速和慢速分量的组合分别代表来自两个M状态的光逆转,其中释放基团分别被质子化和去质子化。光逆转的慢相从释放基团去质子化且天冬氨酸85的pK升高的状态开始,并且可能是由于天冬氨酸85的pK恢复到其初始低值。这为天冬氨酸85和释放基团的pK之间的耦合提供了进一步的证据,并表明质子释放是重新质子化开关的第一步。在碱性pH下,来自反向光反应的电信号幅度以约为8的表观pK降低,而M的量没有相应减少。在中性pH下,精氨酸82带正电荷的胍基从表面上靠近释放基团的位置移动到天冬氨酸85,对光电逆转幅度有很大贡献。在未光解状态下释放基团的pK(约为8)以上,精氨酸82停留在表面附近,导致相应的信号降低。