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腺苷5'-三磷酸结合诱导变构伴侣蛋白GroEL构象变化的瞬态动力学分析

Transient kinetic analysis of adenosine 5'-triphosphate binding-induced conformational changes in the allosteric chaperonin GroEL.

作者信息

Yifrach O, Horovitz A

机构信息

Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.

出版信息

Biochemistry. 1998 May 19;37(20):7083-8. doi: 10.1021/bi980370o.

Abstract

GroEL with an intrinsic fluorescent probe was generated by introducing the mutation Phe44 --> Trp. Different concentrations of ATP were rapidly mixed with GroEL containing this mutation, and the time-resolved change in fluorescence emission, upon excitation at 280 nm, was followed. Three kinetic phases were observed: a fast phase with a large amplitude and two slower phases with small amplitudes. The phases were assigned by (i) determining their dependence on ATP concentration; (ii) measuring their sensitivity to the mutation Arg197 --> Ala, which decreases cooperativity in ATP binding; and (iii) by carrying out mixing experiments of GroEL also with ADP, ATPgammaS, and ATP without K+. The apparent rate constant corresponding to the fast phase displays a bi-sigmoidal dependence on ATP concentration with Hill coefficients that are strikingly similar to those determined in steady-state experiments. This phase, which reflects ATP-induced conformational changes, is sensitive to the mutation Arg197 --> Ala in a manner that parallels steady-state experiments. The rate of conformational change in the presence of ATP is >100 sec-1, which is fast relative to most protein folding rates, whereas in the absence of ATP it is approximately 0.7 s-1. The second phase reflects the transition from an ATP-bound state of GroEL to an ADP-bound state. The third phase, with the smallest amplitude, reflects release of residual contaminants. The results in this study are found to be consistent with the nested model for cooperativity in ATP binding by GroEL [Yifrach, O., and Horovitz, A. (1995) Biochemistry 34, 5303-5308].

摘要

通过引入Phe44→Trp突变产生了带有内在荧光探针的GroEL。将不同浓度的ATP与含有此突变的GroEL快速混合,并跟踪在280nm激发下荧光发射的时间分辨变化。观察到三个动力学阶段:一个具有大振幅的快速阶段和两个具有小振幅的较慢阶段。通过以下方式确定这些阶段:(i) 确定它们对ATP浓度的依赖性;(ii) 测量它们对Arg197→Ala突变的敏感性,该突变会降低ATP结合的协同性;(iii) 进行GroEL与ADP、ATPγS和无K⁺的ATP的混合实验。对应于快速阶段的表观速率常数对ATP浓度呈现双S形依赖性,其希尔系数与稳态实验中确定的系数惊人地相似。这个反映ATP诱导构象变化的阶段,对Arg197→Ala突变的敏感性与稳态实验相似。在ATP存在下构象变化的速率>100秒⁻¹,相对于大多数蛋白质折叠速率来说很快,而在没有ATP的情况下约为0.7秒⁻¹。第二个阶段反映了从GroEL的ATP结合状态到ADP结合状态的转变。第三个阶段,振幅最小,反映了残留污染物的释放。本研究结果与GroEL在ATP结合中协同性的嵌套模型一致 [Yifrach, O., and Horovitz, A. (1995) Biochemistry 34, 5303 - 5308]。

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