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UDP-己糖合酶的动力学机制,一种来自大肠杆菌的1-磷酸己糖尿苷酰转移酶的点变体

Kinetic mechanism of UDP-hexose synthase, a point variant of hexose-1-phosphate uridylyltransferase from Escherichia coli.

作者信息

Ruzicka F J, Geeganage S, Frey P A

机构信息

Institute for Enzyme Research, The Graduate School, College of Agricultural and Life Sciences, University of Wisconsin-Madison 53705, USA.

出版信息

Biochemistry. 1998 Aug 11;37(32):11385-92. doi: 10.1021/bi980877z.

Abstract

Galactose-1-phosphate (galactose-1-P) uridylyltransferase from Escherichia coli catalyzes the interconversion of UDP-glucose and galactose-1-P with UDP-galactose and glucose-1-P by a double-displacement mechanism through a uridylyl-enzyme intermediate, in which the uridine-5'-phosphoryl group is covalently bonded to Nepsilon of His 166. The point variant H166G displays a UDP-hexose synthase activity, in that it catalyzes the reaction of uridine 5'-phosphoimidazolide (UMPIm) with glucose-1-P to form UDP-glucose and imidazole. Inasmuch as the wild-type uridylyltransferase catalyzes its cognate reaction with ping-pong kinetics, an intrinsically ordered substrate binding mechanism, the kinetic mechanism of the UDP-hexose synthase activity of H166G became of interest. The synthase activity follows sequential kinetics [Kim, J., Ruzicka, F., and Frey, P. A. (1990) Biochemistry 29, 10590-10593]. In this work, product inhibition patterns for the synthase activity of H166G indicate random equilibrium binding of substrates. Comparison of the synthase activities of the variants H166G and H166A showed that the glycine variant is about 340- and 600-fold more active than the alanine variant in the forward and reverse directions, respectively. The kinetic consequences of varying the amino acid at position 166 were largely kcat effects, with more modest Km effects. Comparison of the synthase activities of these variants with that of the wild-type enzyme in the production of glucose-1-P showed that the loss of the beta-carbon of His 166 in the complex H166G-UMPIm increases the activation energy for uridylyl group transfer by 2.4 kcal mol-1, and the presence of two additional hydrogen atoms in the complex H166A-UMPIm increases the activation energy by 6.2 kcal mol-1. It is concluded that the active site is much less tolerant of additional steric bulk in the locus of the beta-carbon of His 166 than it is of the loss of the beta-carbon. The sensitivities to additional steric bulk around other positions of the His 166-imidazole ring are much less severe, as indicated by the reactivities of methylated analogues of UMPIm in the synthase reaction of H166G. Uridine 5'-phospho-N-methylimidazolide is more reactive as a synthase substrate than UMPIm, and this is attributed to the positive charge of the imidazole ring. The fact that the imidazole ring of the wild-type covalent uridylyl-enzyme retains its proton and is positively charged is supported by the pH-rate profile for hydrolysis of the intermediate.

摘要

来自大肠杆菌的1-磷酸半乳糖(galactose-1-P)尿苷酰转移酶通过双置换机制,经尿苷酰化酶中间体催化UDP-葡萄糖和1-磷酸半乳糖与UDP-半乳糖和1-磷酸葡萄糖之间的相互转化,其中尿苷-5'-磷酸基团共价结合到His 166的Nε上。点变体H166G具有UDP-己糖合酶活性,因为它催化5'-磷酸咪唑核苷(UMPIm)与1-磷酸葡萄糖反应形成UDP-葡萄糖和咪唑。鉴于野生型尿苷酰转移酶以乒乓动力学催化其同源反应,即一种内在有序的底物结合机制,H166G的UDP-己糖合酶活性的动力学机制就变得令人感兴趣。该合酶活性遵循有序动力学[Kim, J., Ruzicka, F., and Frey, P. A. (1990) Biochemistry 29, 10590 - 10593]。在这项工作中,H166G合酶活性的产物抑制模式表明底物的随机平衡结合。变体H166G和H166A的合酶活性比较表明,甘氨酸变体在正向和反向反应中的活性分别比丙氨酸变体高约340倍和600倍。在166位改变氨基酸的动力学结果主要是kcat效应,而Km效应较小。这些变体与野生型酶在生成1-磷酸葡萄糖方面的合酶活性比较表明,在复合物H166G-UMPIm中His 166的β-碳缺失使尿苷酰基团转移的活化能增加2.4 kcal mol-1,而在复合物H166A-UMPIm中两个额外氢原子的存在使活化能增加6.2 kcal mol-1。得出的结论是,活性位点对His 166的β-碳位置处额外的空间体积的耐受性远低于对β-碳缺失的耐受性。如UMPIm甲基化类似物在H166G合酶反应中的反应性所示,His 166-咪唑环其他位置周围对额外空间体积的敏感性要低得多。5'-磷酸-N-甲基咪唑核苷作为合酶底物比UMPIm更具反应性,这归因于咪唑环的正电荷。野生型共价尿苷酰化酶的咪唑环保留其质子并带正电荷这一事实得到中间体水解的pH-速率曲线的支持。

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