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用于涉及卤代麻醉剂的分子力学/动力学计算的力场评估。

Evaluation of forcefields for molecular mechanics/dynamics calculations involving halogenated anesthetics.

作者信息

Trudell J R, Bertaccini E

机构信息

Department of Anesthesia, Stanford School of Medicine, CA 94305-5117, USA.

出版信息

Toxicol Lett. 1998 Nov 23;100-101:413-9. doi: 10.1016/s0378-4274(98)00215-x.

DOI:10.1016/s0378-4274(98)00215-x
PMID:10049174
Abstract

(1) Successful application of molecular mechanics and molecular dynamics calculations to the binding of halogenated anesthetics requires forcefields with correct parameters for halocarbons. (2) Unfortunately, our survey of six popular forcefields revealed that some of them provide a very poor representation of electrostatic interactions for the halogens. (3) This problem is due to poor or missing assignments of partial atomic charges to the halogen atoms. (4) We describe the forcefields most appropriate for use with halogenated anesthetics and suggest a general method for editing the assignment of partial atomic charges by performing an initial quantum mechanics calculation.

摘要

(1) 将分子力学和分子动力学计算成功应用于卤代麻醉剂的结合需要具有正确卤代烃参数的力场。(2) 不幸的是,我们对六种常用力场的研究表明,其中一些力场对卤素的静电相互作用的描述非常差。(3) 这个问题是由于对卤素原子的部分原子电荷分配不当或缺失所致。(4) 我们描述了最适合用于卤代麻醉剂的力场,并提出了一种通过进行初始量子力学计算来编辑部分原子电荷分配的通用方法。

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The Molecular Mechanisms of Anesthetic Action: Updates and Cutting Edge Developments from the Field of Molecular Modeling.麻醉作用的分子机制:分子建模领域的最新进展与前沿发展
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General anesthetic binding to gramicidin A: the structural requirements.全身麻醉剂与短杆菌肽A的结合:结构要求
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