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线粒体DNA控制区串联重复序列与狗鱼属鱼类的系统地理学

Tandemly repeated sequences in the mitochondrial DNA control region and phylogeography of the Pike-Perches Stizostedion.

作者信息

Faber J E, Stepien C A

机构信息

Department of Biology, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, Ohio, 44106-7080, USA.

出版信息

Mol Phylogenet Evol. 1998 Dec;10(3):310-22. doi: 10.1006/mpev.1998.0530.

Abstract

DNA sequences from the mitochondrial DNA control region are used to test the phylogeographic relationships among the pike-perches, Stizostedion (Teleostei: Percidae) and to examine patterns of variation. Sequences reveal two types of variability: single nucleotide polymorphisms and 6 to 14 copies of 10- to 11-base-pair tandemly repeated sequences. Numbers of copies of the tandem repeats are found to evolve too rapidly to detect phylogenetic signal at any taxonomic level, even among populations. Sequence similarities of the tandem repeats among Stizostedion and other percids suggest concerted evolutionary processes. Predicted folding of the tandem repeats and their proximity to termination-associated sequences indicate that secondary structure mediates slipped-strand mispairing among the d-loop, heavy, and light strands. Neighbor-joining and maximum parsimony analyses of sequences indicate that the genus is divided into clades on the continents of North America and Eurasia. Calibrating genetic distances with divergence times supports the hypothesis that Stizostedion dispersed from Eurasia to North America across a North Pacific Beringial land bridge approximately 4 million years before present, near the beginning of the Pliocene Epoch. The North American S. vitreum and S. canadense appear separated by about 2.75 million years, and the Eurasian S. lucioperca and S. volgensis are diverged by about 1.8 million years, suggesting that speciation occurred during the late Pliocene Epoch.

摘要

来自线粒体DNA控制区的DNA序列被用于测试狗鱼科(鲈形目:鲈科)梭鲈属之间的系统地理学关系,并研究变异模式。序列揭示了两种变异类型:单核苷酸多态性以及10至11个碱基对串联重复序列的6至14个拷贝。发现串联重复序列的拷贝数进化太快,以至于在任何分类水平上都无法检测到系统发育信号,即使在种群之间也是如此。梭鲈属与其他鲈科鱼类串联重复序列的序列相似性表明存在协同进化过程。串联重复序列的预测折叠及其与终止相关序列的接近程度表明,二级结构介导了d环、重链和轻链之间的滑链错配。对序列进行邻接法和最大简约法分析表明,该属在北美和欧亚大陆被分为不同的进化枝。用分歧时间校准遗传距离支持了这样的假说:梭鲈属大约在距今400万年前,上新世初期,从欧亚大陆通过北太平洋白令陆桥扩散到北美。北美玻璃梭鲈和加拿大梭鲈似乎在约275万年前分化,而欧亚大陆的河鲈和伏尔加河鲈则在约180万年前分化,这表明物种形成发生在上新世晚期。

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