Kudryavtsev A B, Mirov S B, DeLucas L J, Nicolete C, van der Woerd M, Bray T L, Basiev T T
The University of Alabama at Birmingham, Department of Physics, 310 Campbell Hall, 1300 University Boulevard, Birmingham, AL 35294-1170, USA.
Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 2):1216-29. doi: 10.1107/s0907444998001486.
Polarized Raman spectra have been obtained for tetragonal lysozyme single crystals of different relative quality. The Raman band at 507 cm-1, which corresponds to the totally symmetric stretch vibration of the gauche-gauche-gauche (ggg) disulfide bridges of the protein, has been shown to possess different polarization characteristics compared with the gauche-gauche-trans (ggt) disulfide bridge band at 528 cm-1. The relative intensities of the ggg and ggt bands in the polarized Raman spectra have been numerically estimated for a number of tetragonal lysozyme single crystals, the X-ray diffraction data of which are available from the Protein Data Bank. On the basis of comparison between the experimental and calculated polarization characteristics of the disulfide Raman lines, the following main conclusions have been drawn. The orientation of the protein molecules correlates with the average orientation of their ggg disulfide bridges. This in turn can be described by the rhoggg value which reflects the average orientation of the S-S bonds with respect to the Z crystallographic axis and can be determined from polarized Raman spectra. Crystals of better quality are characterized by a better alignment of the protein molecules with respect to the Z axis, a smaller perturbation of the protein molecules in the crystal lattice and a somewhat higher interlattice water content.
已获得不同相对质量的四方晶系溶菌酶单晶的偏振拉曼光谱。507 cm-1处的拉曼带对应于蛋白质中gauche-gauche-gauche(ggg)二硫键的完全对称伸缩振动,与528 cm-1处gauche-gauche-trans(ggt)二硫键带相比,已显示出具有不同的偏振特性。对于一些四方晶系溶菌酶单晶,已对偏振拉曼光谱中ggg和ggt带的相对强度进行了数值估算,其X射线衍射数据可从蛋白质数据库获得。基于二硫键拉曼线的实验和计算偏振特性之间的比较,得出了以下主要结论。蛋白质分子的取向与其ggg二硫键的平均取向相关。这又可以用rhoggg值来描述,该值反映了S-S键相对于Z结晶轴的平均取向,并且可以从偏振拉曼光谱中确定。质量较好的晶体的特征在于蛋白质分子相对于Z轴的排列更好、晶格中蛋白质分子的扰动较小以及晶格间水含量略高。