Artiukh R I, Kachalova G S, Lanina N F, Nikol'skiĭ D O, Timofeev V P, Bartunik Kh D
Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, 142290 Russia.
Biofizika. 2002 Sep-Oct;47(5):795-805.
The dynamics of the side groups of amino acid residues and local conformational changes in the lysozyme molecule upon dehydration and rehydration of lysozyme crystals were studied by the methods of spin label, X-ray diffraction, and molecular dynamics. The His15 residue of lysozyme from chicken egg white was modified by spin label, and spin-labeled tetragonal crystals of the protein were grown. The spatial structure of the covalently bound spin label and its immediate surroundings in the lysozyme tetragonal crystal was determined. The conformation of a fragment of the lysozyme molecule with the spin label on His15, optimized by the method of molecular dynamics, closely agreed with X-ray data. It was found by the X-ray diffraction analysis that a decrease in relative humidity to 40% is accompanied by both a decrease in the unit cell volume by 27% and a change in the diffraction field of roentgenograms from 0.23 to 0.60 HM. The dehydration of spin-labeled lysozyme crystals leads to an anomalous widening of EPR peaks without changes in their position. The dehydration in the humidity range studied has a two-stage character. The decrease in humidity to 75% is accompanied by a sharp change in the parameters measured, and on further decrease in humidity to 40% they change insignificantly. The first stage is caused by the removal of the greater part of molecules of bulk water, and the second stage is due to the removal of the remaining bulk water and possible changes in the dynamics of weakly bound water molecules and their position. The simulation of experimental EPR spectra showed that the anomalous broadening of the spectrum upon dehydration is related to an increase in the dispersion of spin label orientations induced by changes in the network of hydrogen bonds generated by water molecules in the vicinity of the spin label and a possible turn (by no more than 5 degrees) of the entire protein molecule. After rehydration, the physical state of the lysozyme crystal did not return to the starting point.
采用自旋标记、X射线衍射和分子动力学方法,研究了溶菌酶晶体脱水和再水化过程中溶菌酶分子氨基酸残基侧链的动力学及局部构象变化。用自旋标记修饰了来自鸡蛋白的溶菌酶的His15残基,并培养了该蛋白的自旋标记四方晶体。测定了溶菌酶四方晶体中与自旋标记共价结合的空间结构及其紧邻环境。通过分子动力学方法优化的、在His15上带有自旋标记的溶菌酶分子片段的构象与X射线数据高度吻合。通过X射线衍射分析发现,相对湿度降至40%时,晶胞体积减小27%,同时X射线衍射图的衍射场从0.23变为0.60 HM。自旋标记溶菌酶晶体的脱水导致EPR峰异常变宽,但其位置不变。在所研究的湿度范围内,脱水具有两阶段特征。湿度降至75%时,所测参数急剧变化,湿度进一步降至40%时,变化不明显。第一阶段是由于大部分体相水分子的去除,第二阶段是由于剩余体相水分子的去除以及弱结合水分子动力学及其位置可能发生的变化。实验EPR谱的模拟表明,脱水时谱的异常展宽与自旋标记附近水分子形成的氢键网络变化引起的自旋标记取向分散增加以及整个蛋白质分子可能转动(不超过5度)有关。再水化后,溶菌酶晶体的物理状态未恢复到起始点。