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1
Comparative sequence analysis of tmRNA.
Nucleic Acids Res. 1999 May 15;27(10):2063-71. doi: 10.1093/nar/27.10.2063.
2
Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature.
Nucleic Acids Res. 2001 Apr 1;29(7):1602-7. doi: 10.1093/nar/29.7.1602.
4
BRUCE: a program for the detection of transfer-messenger RNA genes in nucleotide sequences.
Nucleic Acids Res. 2002 Aug 1;30(15):3449-53. doi: 10.1093/nar/gkf459.
6
tmRDB (tmRNA database).
Nucleic Acids Res. 2003 Jan 1;31(1):446-7. doi: 10.1093/nar/gkg019.
10
Structural studies of the tRNA domain of tmRNA.
J Mol Biol. 2001 Jun 8;309(3):727-35. doi: 10.1006/jmbi.2001.4632.

引用本文的文献

1
A Proposal for the RNAome at the Dawn of the Last Universal Common Ancestor.
Genes (Basel). 2024 Sep 11;15(9):1195. doi: 10.3390/genes15091195.
2
Benchmarking of five NGS mapping tools for the reference alignment of bacterial outer membrane vesicles-associated small RNAs.
Front Microbiol. 2024 Jul 19;15:1401985. doi: 10.3389/fmicb.2024.1401985. eCollection 2024.
3
Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.
Front Microbiol. 2024 Mar 4;15:1369760. doi: 10.3389/fmicb.2024.1369760. eCollection 2024.
4
KnotAli: informed energy minimization through the use of evolutionary information.
BMC Bioinformatics. 2022 May 3;23(1):159. doi: 10.1186/s12859-022-04673-3.
5
Accelerated RNA secondary structure design using preselected sequences for helices and loops.
RNA. 2018 Nov;24(11):1555-1567. doi: 10.1261/rna.066324.118. Epub 2018 Aug 10.
7
Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032.
BMC Genomics. 2013 Oct 19;14(1):714. doi: 10.1186/1471-2164-14-714.
9
Mutational patterns in RNA secondary structure evolution examined in three RNA families.
PLoS One. 2011;6(6):e20484. doi: 10.1371/journal.pone.0020484. Epub 2011 Jun 17.
10
TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
BMC Bioinformatics. 2011 Apr 20;12:108. doi: 10.1186/1471-2105-12-108.

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