相似文献
1
BRUCE: a program for the detection of transfer-messenger RNA genes in nucleotide sequences.
Nucleic Acids Res. 2002 Aug 1;30(15):3449-53. doi: 10.1093/nar/gkf459.
2
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.
Nucleic Acids Res. 2004 Jan 2;32(1):11-6. doi: 10.1093/nar/gkh152. Print 2004.
3
Comparative sequence analysis of tmRNA.
Nucleic Acids Res. 1999 May 15;27(10):2063-71. doi: 10.1093/nar/27.10.2063.
4
A second eukaryotic group with mitochondrion-encoded tmRNA: in silico identification and experimental confirmation.
RNA Biol. 2013 Jul;10(7):1117-24. doi: 10.4161/rna.25376. Epub 2013 Jun 17.
5
Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging.
Nucleic Acids Res. 2001 Nov 15;29(22):4663-73. doi: 10.1093/nar/29.22.4663.
6
tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter.
Proc Natl Acad Sci U S A. 2000 Jul 5;97(14):7778-83. doi: 10.1073/pnas.97.14.7778.
7
Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E. coli tmRNA.
J Mol Biol. 1999 Feb 26;286(3):733-44. doi: 10.1006/jmbi.1998.2487.
8
Phylogenetic analysis of tmRNA secondary structure.
RNA. 1996 Dec;2(12):1306-10.
9
Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature.
Nucleic Acids Res. 2001 Apr 1;29(7):1602-7. doi: 10.1093/nar/29.7.1602.
10
The structure and function of tRNA-like domain in E. coli tmRNA.
Nucleic Acids Symp Ser. 2000(44):263-4. doi: 10.1093/nass/44.1.263.
引用本文的文献
1
Identifying pathogenicity islands in bacterial pathogenomics using computational approaches.
Pathogens. 2014 Jan 13;3(1):36-56. doi: 10.3390/pathogens3010036.
2
Islander: a database of precisely mapped genomic islands in tRNA and tmRNA genes.
Nucleic Acids Res. 2015 Jan;43(Database issue):D48-53. doi: 10.1093/nar/gku1072. Epub 2014 Nov 5.
3
Ends of the line for tmRNA-SmpB.
Front Microbiol. 2014 Aug 13;5:421. doi: 10.3389/fmicb.2014.00421. eCollection 2014.
4
The plastid genome of the red macroalga Grateloupia taiwanensis (Halymeniaceae).
PLoS One. 2013 Jul 19;8(7):e68246. doi: 10.1371/journal.pone.0068246. Print 2013.
5
Computational analysis of noncoding RNAs.
Wiley Interdiscip Rev RNA. 2012 Nov-Dec;3(6):759-78. doi: 10.1002/wrna.1134. Epub 2012 Sep 18.
6
Genome sequence of temperate bacteriophage Psymv2 from Antarctic Dry Valley soil isolate Psychrobacter sp. MV2.
Extremophiles. 2012 Sep;16(5):715-26. doi: 10.1007/s00792-012-0467-7. Epub 2012 Jul 4.
7
Genome shrinkage and loss of nutrient-providing potential in the obligate symbiont of the primitive termite Mastotermes darwiniensis.
Appl Environ Microbiol. 2012 Jan;78(1):204-10. doi: 10.1128/AEM.06540-11. Epub 2011 Oct 21.
8
Massive genomic decay in Serratia symbiotica, a recently evolved symbiont of aphids.
Genome Biol Evol. 2011;3:195-208. doi: 10.1093/gbe/evr002. Epub 2011 Jan 25.
9
Detecting genomic islands using bioinformatics approaches.
Nat Rev Microbiol. 2010 May;8(5):373-82. doi: 10.1038/nrmicro2350.
10
Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica.
PLoS Genet. 2009 Nov;5(11):e1000721. doi: 10.1371/journal.pgen.1000721. Epub 2009 Nov 13.
本文引用的文献
1
The tmRNA Website: invasion by an intron.
Nucleic Acids Res. 2002 Jan 1;30(1):179-82. doi: 10.1093/nar/30.1.179.
2
Emerging views on tmRNA-mediated protein tagging and ribosome rescue.
Mol Microbiol. 2001 Nov;42(4):879-85. doi: 10.1046/j.1365-2958.2001.02701.x.
3
tmRDB (tmRNA database).
Nucleic Acids Res. 2001 Jan 1;29(1):171-2. doi: 10.1093/nar/29.1.171.
4
tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter.
Proc Natl Acad Sci U S A. 2000 Jul 5;97(14):7778-83. doi: 10.1073/pnas.97.14.7778.
5
The 10Sa RNA gene of Thermus thermophilus.
DNA Seq. 1998 Mar;9(1):31-5. doi: 10.3109/10425179809050022.
6
A bacterial RNA that functions as both a tRNA and an mRNA.
Trends Biochem Sci. 1998 Jan;23(1):25-9. doi: 10.1016/s0968-0004(97)01159-6.
7
Searching for patterns in genomic data.
Trends Genet. 1997 Dec;13(12):497-8. doi: 10.1016/s0168-9525(97)01347-4.
8
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. doi: 10.1093/nar/25.17.3389.
9
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA.
Science. 1996 Feb 16;271(5251):990-3. doi: 10.1126/science.271.5251.990.
10
C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide.
J Biol Chem. 1995 Apr 21;270(16):9322-6. doi: 10.1074/jbc.270.16.9322.
Zotero 插件