Williams J C, Zeelen J P, Neubauer G, Vriend G, Backmann J, Michels P A, Lambeir A M, Wierenga R K
European Molecular Biology Laboratory, Heidelberg, Germany.
Protein Eng. 1999 Mar;12(3):243-50. doi: 10.1093/protein/12.3.243.
The dimeric enzyme triosephosphate isomerase (TIM) has a very tight and rigid dimer interface. At this interface a critical hydrogen bond is formed between the main chain oxygen atom of the catalytic residue Lys13 and the completely buried side chain of Gln65 (of the same subunit). The sequence of Leishmania mexicana TIM, closely related to Trypanosoma brucei TIM (68% sequence identity), shows that this highly conserved glutamine has been replaced by a glutamate. Therefore, the 1.8 A crystal structure of leishmania TIM (at pH 5.9) was determined. The comparison with the structure of trypanosomal TIM shows no rearrangements in the vicinity of Glu65, suggesting that its side chain is protonated and is hydrogen bonded to the main chain oxygen of Lys13. Ionization of this glutamic acid side chain causes a pH-dependent decrease in the thermal stability of leishmania TIM. The presence of this glutamate, also in its protonated state, disrupts to some extent the conserved hydrogen bond network, as seen in all other TIMs. Restoration of the hydrogen bonding network by its mutation to glutamine in the E65Q variant of leishmania TIM results in much higher stability; for example, at pH 7, the apparent melting temperature increases by 26 degrees C (57 degrees C for leishmania TIM to 83 degrees C for the E65Q variant). This mutation does not affect the kinetic properties, showing that even point mutations can convert a mesophilic enzyme into a superstable enzyme without losing catalytic power at the mesophilic temperature.
二聚体酶磷酸丙糖异构酶(TIM)具有非常紧密且刚性的二聚体界面。在该界面处,催化残基Lys13的主链氧原子与(同一亚基中)完全埋藏的Gln65侧链之间形成了一个关键的氢键。墨西哥利什曼原虫TIM的序列与布氏锥虫TIM密切相关(序列同一性为68%),结果表明,这个高度保守的谷氨酰胺已被谷氨酸取代。因此,测定了墨西哥利什曼原虫TIM在pH 5.9时1.8埃的晶体结构。与锥虫TIM结构的比较表明,在Glu65附近没有重排,这表明其侧链被质子化,并与Lys13的主链氧形成氢键。该谷氨酸侧链的电离导致墨西哥利什曼原虫TIM的热稳定性随pH值下降。正如在所有其他TIM中所见,即使处于质子化状态,该谷氨酸的存在也会在一定程度上破坏保守的氢键网络。在墨西哥利什曼原虫TIM的E65Q变体中,通过将其突变为谷氨酰胺来恢复氢键网络,会使其稳定性大大提高;例如,在pH 7时,表观解链温度升高26℃(从墨西哥利什曼原虫TIM的57℃升至E65Q变体的83℃)。这种突变不影响动力学性质,这表明即使是点突变也能将一种嗜温酶转化为超稳定酶,而在嗜温温度下不会丧失催化能力。