Department of Chemistry, University at Buffalo, SUNY, Buffalo, New York 14260-3000, United States.
Biocenter Oulu, University of Oulu, P.O. Box 5000, FIN-90014 Oulu, Finland.
Biochemistry. 2023 Jun 6;62(11):1794-1806. doi: 10.1021/acs.biochem.3c00133. Epub 2023 May 10.
Four catalytic amino acids at triosephosphate isomerase (TIM) are highly conserved: N11, K13, H95, and E167. Asparagine 11 is the last of these to be characterized in mutagenesis studies. The ND2 side chain atom of N11 is hydrogen bonded to the O-1 hydroxyl of enzyme-bound dihydroxyacetone phosphate (DHAP), and it sits in an extended chain of hydrogen-bonded side chains that includes T75' from the second subunit. The N11A variants of wild-type TIM from (TIM) and (TIM) undergo dissociation from the dimer to monomer under our assay conditions. Values of = 8 × 10 and 1 × 10 M, respectively, were determined for the conversion of monomeric N11A TIM and TIM into their homodimers. The N11A substitution at the variant of TIM previously stabilized by the E65Q substitution gives the N11A/E65Q variant that is stable to dissociation under our assay conditions. The X-ray crystal structure of N11A/E65Q TIM shows an active site that is essentially superimposable on that for wild-type TIM, which also has a glutamine at position 65. A comparison of the kinetic parameters for E65Q TIM and N11A/E65Q TIM-catalyzed reactions of ()-glyceraldehyde 3-phosphate (GAP) and (DHAP) shows that the N11A substitution results in a (13-14)-fold decrease in / for substrate isomerization and a similar decrease in for DHAP but only a 2-fold decrease in for GAP.
四催化氨基酸三磷酸甘油醛异构酶 (TIM) 是高度保守的:N11、K13、H95 和 E167。天冬酰胺 11 是这些在诱变研究中被特征化的最后一个。N11 的 ND2 侧链原子与酶结合的二羟丙酮磷酸 (DHAP) 的 O-1 羟基形成氢键,它位于包括第二个亚基的 T75'的氢键合侧链的延伸链中。来自 (TIM) 和 (TIM) 的野生型 TIM 的 N11A 变体在我们的测定条件下从二聚体解离为单体。对于单体 N11A TIM 和 TIM 转化为它们的同源二聚体,分别确定了 = 8 × 10 和 1 × 10 M 的值。先前通过 E65Q 取代稳定的 TIM 变体的 N11A 取代给出了在我们的测定条件下稳定的 N11A/E65Q 变体。N11A/E65Q TIM 的 X 射线晶体结构显示出一个基本上与野生型 TIM 的活性位点重叠的活性位点,其位置 65 也有一个谷氨酰胺。对 E65Q TIM 和 N11A/E65Q TIM 催化的 ()-甘油醛 3-磷酸 (GAP) 和 (DHAP) 反应的动力学参数进行比较表明,N11A 取代导致底物异构化的 / 降低了 13-14 倍,DHAP 的 也降低了类似程度,但 GAP 的 仅降低了 2 倍。