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芽殖酵母中对SR剪接因子具有特异性的激酶的保守性。

Conservation in budding yeast of a kinase specific for SR splicing factors.

作者信息

Siebel C W, Feng L, Guthrie C, Fu X D

机构信息

Department of Biochemistry and Biophysics, University of California, 513 Parnassus Avenue, San Francisco, CA 94143-0448, USA.

出版信息

Proc Natl Acad Sci U S A. 1999 May 11;96(10):5440-5. doi: 10.1073/pnas.96.10.5440.

DOI:10.1073/pnas.96.10.5440
PMID:10318902
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC21878/
Abstract

SR protein kinases (SRPKs) and their substrates, the SR family of serine/arginine-rich pre-mRNA splicing factors, appear to be key regulators of alternative splicing. Although SR proteins have been well characterized through biochemical experiments in metazoans, their functions in vivo are unclear. Because of the strict splice site consensus and near absence of alternative splicing in Saccharomyces cerevisiae, it had been thought that budding yeast would lack an SRPK and its substrates. Here, we present structural, biochemical, and cell-biological evidence that directly demonstrates an SR protein kinase, Sky1p, as well as a number of SRPK substrates in S. cerevisiae. One of these substrates is Npl3p, an SR-like protein involved in mRNA export. This finding raises the provocative possibility that Sky1p, and by extension metazoan SRPKs, regulates mRNA export or the nucleocytoplasmic shuttling of RS domain proteins. The unexpected discovery of an SR protein kinase in budding yeast provides a foundation for genetic dissection of the biological functions of SR proteins and their kinases.

摘要

SR蛋白激酶(SRPKs)及其底物——富含丝氨酸/精氨酸的前体mRNA剪接因子SR家族,似乎是可变剪接的关键调节因子。尽管通过后生动物的生化实验已对SR蛋白进行了充分表征,但其在体内的功能仍不清楚。由于酿酒酵母中存在严格的剪接位点共有序列且几乎不存在可变剪接,因此人们一直认为芽殖酵母缺乏SRPK及其底物。在此,我们提供了结构、生化和细胞生物学证据,直接证明了酿酒酵母中存在一种SR蛋白激酶Sky1p以及多种SRPK底物。其中一种底物是Npl3p,一种参与mRNA输出的类SR蛋白。这一发现引发了一种引人深思的可能性,即Sky1p以及后生动物的SRPKs可能调节mRNA输出或RS结构域蛋白的核质穿梭。在芽殖酵母中意外发现SR蛋白激酶为对SR蛋白及其激酶的生物学功能进行遗传剖析奠定了基础。

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本文引用的文献

1
Phosphorylation regulates in vivo interaction and molecular targeting of serine/arginine-rich pre-mRNA splicing factors.磷酸化作用调节富含丝氨酸/精氨酸的前体mRNA剪接因子在体内的相互作用及分子靶向。
J Cell Biol. 1999 May 3;145(3):447-55. doi: 10.1083/jcb.145.3.447.
2
Genetic analysis of the SR protein ASF/SF2: interchangeability of RS domains and negative control of splicing.SR蛋白ASF/SF2的遗传分析:RS结构域的互换性与剪接的负调控
Genes Dev. 1998 Jul 15;12(14):2222-33. doi: 10.1101/gad.12.14.2222.
3
Fission yeast mitotic regulator Dsk1 is an SR protein-specific kinase.裂殖酵母有丝分裂调节因子Dsk1是一种SR蛋白特异性激酶。
J Biol Chem. 1998 Mar 6;273(10):5963-9. doi: 10.1074/jbc.273.10.5963.
4
SRPK2: a differentially expressed SR protein-specific kinase involved in mediating the interaction and localization of pre-mRNA splicing factors in mammalian cells.SRPK2:一种差异表达的SR蛋白特异性激酶,参与介导哺乳动物细胞中前体mRNA剪接因子的相互作用和定位。
J Cell Biol. 1998 Feb 23;140(4):737-50. doi: 10.1083/jcb.140.4.737.
5
Novel SR-protein-specific kinase, SRPK2, disassembles nuclear speckles.新型SR蛋白特异性激酶SRPK2可拆散核斑。
Biochem Biophys Res Commun. 1998 Jan 14;242(2):357-64. doi: 10.1006/bbrc.1997.7913.
6
Identification and characterization of srp1, a gene of fission yeast encoding a RNA binding domain and a RS domain typical of SR splicing factors.裂殖酵母中一个编码RNA结合结构域和典型SR剪接因子RS结构域的基因srp1的鉴定与表征。
Nucleic Acids Res. 1998 Jan 15;26(2):505-11. doi: 10.1093/nar/26.2.505.
7
A specific subset of SR proteins shuttles continuously between the nucleus and the cytoplasm.特定的SR蛋白亚群在细胞核和细胞质之间持续穿梭。
Genes Dev. 1998 Jan 1;12(1):55-66. doi: 10.1101/gad.12.1.55.
8
Both phosphorylation and dephosphorylation of ASF/SF2 are required for pre-mRNA splicing in vitro.体外前体mRNA剪接需要ASF/SF2的磷酸化和去磷酸化。
RNA. 1997 Dec;3(12):1456-67.
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CRM1 is responsible for intracellular transport mediated by the nuclear export signal.CRM1负责由核输出信号介导的细胞内运输。
Nature. 1997 Nov 20;390(6657):308-11. doi: 10.1038/36894.
10
A protein related to splicing factor U2AF35 that interacts with U2AF65 and SR proteins in splicing of pre-mRNA.一种与剪接因子U2AF35相关的蛋白质,在pre-mRNA剪接过程中与U2AF65和SR蛋白相互作用。
Nature. 1997 Jul 24;388(6640):397-400. doi: 10.1038/41137.