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多样性分析与组合系列设计的进展。

Advances in diversity profiling and combinatorial series design.

作者信息

Agrafiotis D K, Myslik J C, Salemme F R

机构信息

3-Dimensional Pharmaceuticals, Inc., Exton, PA 19341, USA.

出版信息

Mol Divers. 1998;4(1):1-22. doi: 10.1023/a:1009636310640.

DOI:10.1023/a:1009636310640
PMID:10320984
Abstract

Rapid advances in synthetic and screening technology have recently enabled the simultaneous synthesis and biological evaluation of large chemical libraries containing hundreds to tens of thousands of compounds, using molecular diversity as a means to design and prioritize experiments. This paper reviews some of the most important computational work in the field of diversity profiling and combinatorial library design, with particular emphasis on methodology and applications. It is divided into four sections that address issues related to molecular representation, dimensionality reduction, compound selection, and visualization.

摘要

合成与筛选技术的飞速发展最近使得能够同时合成和生物学评估包含数百至数万种化合物的大型化学文库,利用分子多样性作为设计实验和确定实验优先级的手段。本文综述了多样性分析和组合文库设计领域一些最重要的计算工作,特别强调方法和应用。它分为四个部分,分别讨论与分子表示、降维、化合物选择和可视化相关的问题。

相似文献

1
Advances in diversity profiling and combinatorial series design.多样性分析与组合系列设计的进展。
Mol Divers. 1998;4(1):1-22. doi: 10.1023/a:1009636310640.
2
Applications of self-organizing neural networks in virtual screening and diversity selection.自组织神经网络在虚拟筛选和多样性选择中的应用。
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Scaffold composition and biological relevance of screening libraries.筛选文库的支架组成及生物学相关性。
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4
Application of combinatorial library methods in cancer research and drug discovery.组合文库方法在癌症研究与药物发现中的应用。
Anticancer Drug Des. 1997 Apr;12(3):145-67.
5
Combinatorial library design for diversity, cost efficiency, and drug-like character.用于多样性、成本效益和类药物特性的组合文库设计。
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Toward automated biochemotype annotation for large compound libraries.迈向大型化合物库的自动生物化学类型注释。
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7
Diversity in medicinal chemistry space.药物化学领域的多样性。
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Design of a compound screening collection for use in high throughput screening.用于高通量筛选的化合物筛选库设计
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A reagent-based strategy for the design of large combinatorial libraries: a preliminary experimental validation.一种基于试剂的大型组合文库设计策略:初步实验验证
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[Combinatorial synthesis: an important methodology in medicinal chemistry].[组合合成:药物化学中的一种重要方法]
An R Acad Nac Med (Madr). 2005;122(4):723-37; discussion 737-40.

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On the information expressed in enzyme primary structure: lessons from Ribonuclease A.在酶一级结构所表达的信息:核糖核酸酶 A 的启示。
Mol Divers. 2010 Nov;14(4):673-86. doi: 10.1007/s11030-009-9211-3. Epub 2009 Nov 17.
2
Multiobjective optimization of combinatorial libraries.组合文库的多目标优化
Mol Divers. 2002;5(4):209-30. doi: 10.1023/a:1021320124615.
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Multiobjective optimization of combinatorial libraries.组合文库的多目标优化

本文引用的文献

1
Computational approaches for combinatorial library design and molecular diversity analysis.用于组合文库设计和分子多样性分析的计算方法。
Curr Opin Chem Biol. 1997 Jun;1(1):54-9. doi: 10.1016/s1367-5931(97)80108-1.
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Optimization and visualization of molecular diversity of combinatorial libraries.组合文库分子多样性的优化与可视化
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Mol Divers. 1996 Oct;2(1-2):64-74. doi: 10.1007/BF01718702.
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Locating biologically active compounds in medium-sized heterogeneous datasets by topological autocorrelation vectors: dopamine and benzodiazepine agonists.利用拓扑自相关向量在中等规模异构数据集中定位生物活性化合物:多巴胺和苯二氮䓬激动剂
J Chem Inf Comput Sci. 1996 Nov-Dec;36(6):1205-13. doi: 10.1021/ci960346m.
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Principal components describing biological activities and molecular diversity of heterocyclic aromatic ring fragments.描述杂环芳环片段生物活性和分子多样性的主成分。
J Med Chem. 1996 Sep 27;39(20):4065-72. doi: 10.1021/jm960058h.
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Stigmata: an algorithm to determine structural commonalities in diverse datasets.特征:一种确定不同数据集中结构共性的算法。
J Chem Inf Comput Sci. 1996 Jul-Aug;36(4):862-71. doi: 10.1021/ci950169+.
9
Molecular diversity in chemical databases: comparison of medicinal chemistry knowledge bases and databases of commercially available compounds.化学数据库中的分子多样性:药物化学知识库与市售化合物数据库的比较。
J Chem Inf Comput Sci. 1996 Jul-Aug;36(4):750-63. doi: 10.1021/ci950168h.
10
Bioisosterism as a molecular diversity descriptor: steric fields of single "topomeric" conformers.作为分子多样性描述符的生物电子等排体:单一“拓扑异构体”构象的立体场
J Med Chem. 1996 Aug 2;39(16):3060-9. doi: 10.1021/jm960291f.