Culver G M, Noller H F
Center for Molecular Biology of RNA, Sinsheimer Laboratories, University of California, Santa Cruz 95064, USA.
RNA. 1999 Jun;5(6):832-43. doi: 10.1017/s1355838299990714.
Previous studies have shown that the 30S ribosomal subunit of Escherichia coli can be reconstituted in vitro from individually purified ribosomal proteins and 16S ribosomal RNA, which were isolated from natural 30S subunits. We have developed a 30S subunit reconstitution system that uses only recombinant ribosomal protein components. The genes encoding E. coli ribosomal proteins S2-S21 were cloned, and all twenty of the individual proteins were overexpressed and purified. Reconstitution, following standard procedures, using the complete set of recombinant proteins and purified 16S ribosomal RNA is highly inefficient. Efficient reconstitution of 30S subunits using these components requires sequential addition of proteins, following either the 30S subunit assembly map (Mizushima & Nomura, 1970, Nature 226:1214-1218; Held et al., 1974, J Biol Chem 249:3103-3111) or following the order of protein assembly predicted from in vitro assembly kinetics (Powers et al., 1993, J MoI Biol 232:362-374). In the first procedure, the proteins were divided into three groups, Group I (S4, S7, S8, S15, S17, and S20), Group II (S5, S6, S9, Sll, S12, S13, S16, S18, and S19), and Group III (S2, S3, S10, S14, and S21), which were sequentially added to 16S rRNA with a 20 min incubation at 42 degrees C following the addition of each group. In the second procedure, the proteins were divided into Group I (S4, S6, S11, S15, S16, S17, S18, and S20), Group II (S7, S8, S9, S13, and S19), Group II' (S5 and S12) and Group III (S2, S3, S10, S14, and S21). Similarly efficient reconstitution is observed whether the proteins are grouped according to the assembly map or according to the results of in vitro 30S subunit assembly kinetics. Although reconstitution of 30S subunits using the recombinant proteins is slightly less efficient than reconstitution using a mixture of total proteins isolated from 30S subunits, it is much more efficient than reconstitution using proteins that were individually isolated from ribosomes. Particles reconstituted from the recombinant proteins sediment at 30S in sucrose gradients, bind tRNA in a template-dependent manner, and associate with 50S subunits to form 70S ribosomes that are active in poly(U)-directed polyphenylalanine synthesis. Both the protein composition and the dimethyl sulfate modification pattern of 16S ribosomal RNA are similar for 30S subunits reconstituted with either recombinant proteins or proteins isolated as a mixture from ribosomal subunits as well as for natural 30S subunits.
先前的研究表明,大肠杆菌的30S核糖体亚基可以在体外由从天然30S亚基中分离出的单个纯化核糖体蛋白和16S核糖体RNA重构而成。我们开发了一种仅使用重组核糖体蛋白成分的30S亚基重构系统。编码大肠杆菌核糖体蛋白S2 - S21的基因被克隆,所有二十种单个蛋白均被过量表达并纯化。按照标准程序,使用全套重组蛋白和纯化的16S核糖体RNA进行重构效率非常低。使用这些成分高效重构30S亚基需要按照30S亚基组装图谱(水岛和野村,1970年,《自然》226:1214 - 1218;赫尔德等人,1974年,《生物化学杂志》249:3103 - 3111)或根据体外组装动力学预测的蛋白组装顺序依次添加蛋白(鲍尔斯等人,1993年,《分子生物学杂志》232:362 - 374)。在第一种方法中,将蛋白分为三组,第一组(S4、S7、S8、S15、S17和S20),第二组(S5、S6、S9、S11、S12、S13、S16、S18和S19),第三组(S2、S3、S10、S14和S21),每组添加后在42℃孵育20分钟,然后依次添加到16S rRNA中。在第二种方法中,将蛋白分为第一组(S4、S6、S11、S15、S16、S17、S18和S20),第二组(S7、S8、S9、S13和S19),第二组'(S5和S12)和第三组(S2、S3、S10、S14和S21)。无论蛋白是根据组装图谱分组还是根据体外30S亚基组装动力学结果分组,都能观察到类似的高效重构。尽管使用重组蛋白重构30S亚基的效率略低于使用从30S亚基中分离的总蛋白混合物进行重构,但比使用从核糖体中单独分离的蛋白进行重构要高效得多。由重组蛋白重构的颗粒在蔗糖梯度中沉降系数为30S,以模板依赖的方式结合tRNA,并与50S亚基结合形成在聚(U)指导的聚苯丙氨酸合成中具有活性的70S核糖体。用重组蛋白重构的30S亚基、从核糖体亚基中作为混合物分离的蛋白重构的30S亚基以及天然30S亚基的蛋白组成和16S核糖体RNA的硫酸二甲酯修饰模式都相似。
Nucleic Acids Res. 1984-10-11
Nucleic Acids Res. 2025-2-8
Nat Commun. 2025-1-8
Chem Rev. 2025-1-8
Biomolecules. 2023-6-6
Cell Mol Life Sci. 2021-7
Nat Chem Biol. 2020-7-20
J Mol Biol. 1993-7-20
Proc Natl Acad Sci U S A. 1995-2-14