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Autonomous ribosome biogenesis in vitro.

作者信息

Kosaka Yuishin, Miyawaki Yumi, Mori Megumi, Aburaya Shunsuke, Nishizawa Chisato, Chujo Takeshi, Niwa Tatsuya, Miyazaki Takumi, Sugita Takashi, Fukuyama Mao, Taguchi Hideki, Tomizawa Kazuhito, Sugase Kenji, Ueda Mitsuyoshi, Aoki Wataru

机构信息

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

Japan Society for the Promotion of Science, Kyoto, Japan.

出版信息

Nat Commun. 2025 Jan 8;16(1):514. doi: 10.1038/s41467-025-55853-7.


DOI:10.1038/s41467-025-55853-7
PMID:39779722
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11711502/
Abstract

Ribosome biogenesis is pivotal in the self-replication of life. In Escherichia coli, three ribosomal RNAs and 54 ribosomal proteins are synthesized and subjected to cooperative hierarchical assembly facilitated by numerous accessory factors. Realizing ribosome biogenesis in vitro is a critical milestone for understanding the self-replication of life and creating artificial cells. Despite its importance, this goal has not yet been achieved owing to its complexity. In this study, we report the successful realization of ribosome biogenesis in vitro. Specifically, we developed a highly specific and sensitive reporter assay for the detection of nascent ribosomes. The reporter assay allowed for combinatorial and iterative exploration of reaction conditions for ribosome biogenesis, leading to the simultaneous, autonomous synthesis of both small and large subunits of ribosomes in vitro through transcription, translation, processing, and assembly in a single reaction space. Our achievement represents a crucial advancement toward revealing the fundamental principles underlying the self-replication of life and creating artificial cells.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/9ef230a67738/41467_2025_55853_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/d769fc6525dc/41467_2025_55853_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/80a92fd8c817/41467_2025_55853_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/a7b3596aab51/41467_2025_55853_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/8293ca3230d6/41467_2025_55853_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/9ef230a67738/41467_2025_55853_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/d769fc6525dc/41467_2025_55853_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/80a92fd8c817/41467_2025_55853_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/a7b3596aab51/41467_2025_55853_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/8293ca3230d6/41467_2025_55853_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ce/11711502/9ef230a67738/41467_2025_55853_Fig5_HTML.jpg

相似文献

[1]
Autonomous ribosome biogenesis in vitro.

Nat Commun. 2025-1-8

[2]
Reconstitution of 30S ribosomal subunits in vitro using ribosome biogenesis factors.

RNA. 2018-8-3

[3]
Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry.

Mol Biosyst. 2012-10-30

[4]
Selected reaction monitoring for the quantification of Escherichia coli ribosomal proteins.

PLoS One. 2020

[5]
Ribosome biogenesis and the translation process in Escherichia coli.

Microbiol Mol Biol Rev. 2007-9

[6]
The Loop 2 Region of Ribosomal Protein uS5 Influences Spectinomycin Sensitivity, Translational Fidelity, and Ribosome Biogenesis.

Antimicrob Agents Chemother. 2017-1-24

[7]
Assembly of bacterial ribosomes.

Annu Rev Biochem. 2011

[8]
RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli.

RNA. 2004-12

[9]
On the pursuit to reconstitute the Escherichia coli ribosome from purified components.

J Biochem. 2024-4-29

[10]
In vitro reconstitution of the Escherichia coli 70S ribosome with a full set of recombinant ribosomal proteins.

J Biochem. 2022-2-21

引用本文的文献

[1]
Simultaneous in vitro expression of minimal 21 transfer RNAs by tRNA array method.

Nat Commun. 2025-8-26

[2]
Building a Synthetic Cell Together.

Nat Commun. 2025-8-12

本文引用的文献

[1]
Assembly of the bacterial ribosome with circularly permuted rRNA.

Nucleic Acids Res. 2024-10-14

[2]
Building Synthetic Cells─From the Technology Infrastructure to Cellular Entities.

ACS Synth Biol. 2024-4-19

[3]
Advancing synthetic biology through cell-free protein synthesis.

Comput Struct Biotechnol J. 2023-5-4

[4]
The Long Road to a Synthetic Self-Replicating Central Dogma.

Biochemistry. 2023-4-4

[5]
Near-physiological in vitro assembly of 50S ribosomes involves parallel pathways.

Nucleic Acids Res. 2023-4-11

[6]
Cryo-EM captures early ribosome assembly in action.

Nat Commun. 2023-2-17

[7]
Ribosomal Protein S1 Improves the Protein Yield of an Reconstituted Cell-Free Translation System.

ACS Synth Biol. 2022-2-18

[8]
Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly intermediates.

Structure. 2022-4-7

[9]
In vitro reconstitution of the Escherichia coli 70S ribosome with a full set of recombinant ribosomal proteins.

J Biochem. 2022-2-21

[10]
Loss of Ftsj1 perturbs codon-specific translation efficiency in the brain and is associated with X-linked intellectual disability.

Sci Adv. 2021-3-26

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