• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

恶臭假单胞菌的(S)-扁桃酸脱氢酶:催化碱基组氨酸-274的突变及活性的化学挽救

(S)-Mandelate dehydrogenase from Pseudomonas putida: mutations of the catalytic base histidine-274 and chemical rescue of activity.

作者信息

Lehoux I E, Mitra B

机构信息

Department of Biochemistry and Molecular Biology, School of Medicine, Wayne State University, Detroit, Michigan 48201, USA.

出版信息

Biochemistry. 1999 Aug 3;38(31):9948-55. doi: 10.1021/bi9907532.

DOI:10.1021/bi9907532
PMID:10433701
Abstract

(S)-Mandelate dehydrogenase from Pseudomonas putida, an FMN-dependent alpha-hydroxy acid dehydrogenase, oxidizes (S)-mandelate to benzoylformate. The generally accepted catalytic mechanism for this enzyme involves the formation of a carbanion intermediate. Histidine-274 has been proposed to be the active-site base that abstracts the substrate alpha-proton to generate the carbanion. Histidine-274 was altered to glycine, alanine, and asparagine. All three mutants were completely inactive. The mutants were able to form adducts with sulfite, though with much weaker affinity than the wild-type enzyme. Binding of the inhibitor, (R)-mandelate, was not greatly affected by the mutation, unlike that of the substrate, (S)-mandelate, indicating that H274 plays a role in substrate binding. The activity of H274G and, to a lesser extent, H274A could be partially restored by the addition of exogenous imidazoles. The maximum rescued activity for H274G with imidazole was approximately 0.1% of the wild-type value. Saturation kinetics obtained for rescued activity suggest that formation of a ternary complex of imidazole, enzyme, and substrate is required for catalysis. pH-dependence studies confirm that the free base form of imidazole is the rescue agent. An earlier study of pH profiles of the wild-type enzyme indicated that deprotonation of a residue with a pK(a) of 5.5 in the free enzyme was essential for activity (Lehoux, I. E., and Mitra, B. (1999) Biochemistry 38, 5836-5848). Data obtained in this work confirm that the pK(a) of 5.5 belongs to histidine-274.

摘要

来自恶臭假单胞菌的(S)-扁桃酸脱氢酶是一种依赖黄素单核苷酸的α-羟基酸脱氢酶,可将(S)-扁桃酸氧化为苯甲酰甲酸。该酶普遍接受的催化机制涉及形成碳负离子中间体。已提出组氨酸-274是活性位点碱基,可提取底物α-质子以生成碳负离子。将组氨酸-274分别突变为甘氨酸、丙氨酸和天冬酰胺。所有这三个突变体均完全无活性。这些突变体能够与亚硫酸盐形成加合物,但其亲和力比野生型酶弱得多。与底物(S)-扁桃酸不同,抑制剂(R)-扁桃酸的结合受突变影响不大,这表明H274在底物结合中起作用。添加外源咪唑可部分恢复H274G以及程度较小的H274A的活性。H274G与咪唑的最大恢复活性约为野生型值的0.1%。恢复活性的饱和动力学表明,催化需要咪唑、酶和底物形成三元复合物。pH依赖性研究证实咪唑的游离碱形式是救援剂。早期对野生型酶pH谱的研究表明,游离酶中pK(a)为5.5的残基去质子化对活性至关重要(勒胡克斯,I.E.,和米特拉,B.(1999年)《生物化学》38,5836 - 5848)。这项工作获得的数据证实pK(a)为5.5的残基属于组氨酸-274。

相似文献

1
(S)-Mandelate dehydrogenase from Pseudomonas putida: mutations of the catalytic base histidine-274 and chemical rescue of activity.恶臭假单胞菌的(S)-扁桃酸脱氢酶:催化碱基组氨酸-274的突变及活性的化学挽救
Biochemistry. 1999 Aug 3;38(31):9948-55. doi: 10.1021/bi9907532.
2
Esters of mandelic acid as substrates for (S)-mandelate dehydrogenase from Pseudomonas putida: implications for the reaction mechanism.扁桃酸酯作为恶臭假单胞菌(S)-扁桃酸脱氢酶的底物:对反应机制的启示
Biochemistry. 2004 Feb 24;43(7):1883-90. doi: 10.1021/bi036021y.
3
(S)-Mandelate dehydrogenase from Pseudomonas putida: mechanistic studies with alternate substrates and pH and kinetic isotope effects.恶臭假单胞菌的(S)-扁桃酸脱氢酶:使用替代底物、pH值及动力学同位素效应的机理研究
Biochemistry. 1999 May 4;38(18):5836-48. doi: 10.1021/bi990024m.
4
A transient intermediate in the reaction catalyzed by (S)-mandelate dehydrogenase from Pseudomonas putida.恶臭假单胞菌(S)-扁桃酸脱氢酶催化反应中的一种瞬态中间体。
Biochemistry. 2003 Nov 11;42(44):12893-901. doi: 10.1021/bi035349o.
5
On the catalytic role of the conserved active site residue His466 of choline oxidase.胆碱氧化酶保守活性位点残基His466的催化作用
Biochemistry. 2005 Jan 25;44(3):893-904. doi: 10.1021/bi048056j.
6
Role of glycine 81 in (S)-mandelate dehydrogenase from Pseudomonas putida in substrate specificity and oxidase activity.甘氨酸81在恶臭假单胞菌(S)-扁桃酸脱氢酶的底物特异性和氧化酶活性中的作用。
Biochemistry. 2004 Aug 24;43(33):10692-700. doi: 10.1021/bi049005p.
7
Arginine 165/arginine 277 pair in (S)-mandelate dehydrogenase from Pseudomonas putida: role in catalysis and substrate binding.恶臭假单胞菌(S)-扁桃酸脱氢酶中精氨酸165/精氨酸277对:在催化和底物结合中的作用
Biochemistry. 2002 Oct 15;41(41):12313-9. doi: 10.1021/bi026258e.
8
Structural and kinetic analysis of catalysis by a thiamin diphosphate-dependent enzyme, benzoylformate decarboxylase.硫胺素二磷酸依赖性酶苯甲酰甲酸脱羧酶催化作用的结构与动力学分析
Biochemistry. 2003 Feb 25;42(7):1820-30. doi: 10.1021/bi026490k.
9
Mechanism of the reaction catalyzed by mandelate racemase: structure and mechanistic properties of the D270N mutant.扁桃酸消旋酶催化反应的机制:D270N突变体的结构和机制特性
Biochemistry. 1996 May 7;35(18):5662-9. doi: 10.1021/bi960174m.
10
Site-directed mutagenesis of histidine-90 in Escherichia coli L-threonine dehydrogenase alters its substrate specificity.对大肠杆菌L-苏氨酸脱氢酶中组氨酸-90进行定点诱变会改变其底物特异性。
Arch Biochem Biophys. 1998 Mar 1;351(1):8-16. doi: 10.1006/abbi.1997.0501.

引用本文的文献

1
Metal-Triggered FAD Reduction in d-2-Hydroxyglutarate Dehydrogenase from PAO1.PAO1中d-2-羟基戊二酸脱氢酶的金属触发FAD还原
ACS Bio Med Chem Au. 2024 Dec 6;5(1):204-214. doi: 10.1021/acsbiomedchemau.4c00108. eCollection 2025 Feb 19.
2
Conformational flexibility related to enzyme activity: evidence for a dynamic active-site gatekeeper function of Tyr(215) in Aerococcus viridans lactate oxidase.构象灵活性与酶活性相关:Aerococcus viridans 乳酸氧化酶中 Tyr(215)的动态活性位点守门人功能的证据。
Sci Rep. 2016 Jun 15;6:27892. doi: 10.1038/srep27892.
3
Structural characterization of the virulence factor Sda1 nuclease from Streptococcus pyogenes.
化脓性链球菌毒力因子Sda1核酸酶的结构表征
Nucleic Acids Res. 2016 May 5;44(8):3946-57. doi: 10.1093/nar/gkw143. Epub 2016 Mar 11.
4
Structure based annotation of Helicobacter pylori strain 26695 proteome.基于结构的幽门螺杆菌26695菌株蛋白质组注释
PLoS One. 2014 Dec 30;9(12):e115020. doi: 10.1371/journal.pone.0115020. eCollection 2014.
5
Structural characterization of the virulence factor nuclease A from Streptococcus agalactiae.无乳链球菌毒力因子核酸酶A的结构表征
Acta Crystallogr D Biol Crystallogr. 2014 Nov;70(Pt 11):2937-49. doi: 10.1107/S1399004714019725. Epub 2014 Oct 23.
6
Evolution of the genetic code by incorporation of amino acids that improved or changed protein function.遗传密码的演变是通过掺入改善或改变蛋白质功能的氨基酸来实现的。
J Mol Evol. 2013 Oct;77(4):134-58. doi: 10.1007/s00239-013-9567-y. Epub 2013 Jun 7.
7
Structural insights into catalytic and substrate binding mechanisms of the strategic EndA nuclease from Streptococcus pneumoniae.肺炎链球菌战略内切酶 EndA 的催化和底物结合机制的结构见解。
Nucleic Acids Res. 2011 Apr;39(7):2943-53. doi: 10.1093/nar/gkq1152. Epub 2010 Nov 26.
8
Involvement of ionizable groups in catalysis of human liver glycolate oxidase.可电离基团在人肝脏乙醇酸氧化酶催化中的作用。
J Biol Chem. 2009 Nov 6;284(45):31214-22. doi: 10.1074/jbc.M109.040063. Epub 2009 Sep 16.
9
Structures of the G81A mutant form of the active chimera of (S)-mandelate dehydrogenase and its complex with two of its substrates.(S)-扁桃酸脱氢酶活性嵌合体的G81A突变形式的结构及其与两种底物的复合物。
Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):543-52. doi: 10.1107/S0907444909010270. Epub 2009 May 15.
10
Mechanistic and structural studies of H373Q flavocytochrome b2: effects of mutating the active site base.H373Q 黄素细胞色素b2的机制与结构研究:活性位点碱基突变的影响
Biochemistry. 2007 Jul 3;46(26):7844-51. doi: 10.1021/bi7005543. Epub 2007 Jun 12.