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用于D12S391的改良引物及改良银染技术。

Modified primers for D12S391 and a modified silver staining technique.

作者信息

Ricci U, Giovannucci Uzielli M L, Klintschar M

机构信息

Azienda Meyer - University of Florence, Human Genetics Service, Via Masaccio 209, I-50132 Florence, Italy.

出版信息

Int J Legal Med. 1999;112(5):342-4. doi: 10.1007/s004140050267.

DOI:10.1007/s004140050267
PMID:10460434
Abstract

In this paper we describe a new primer pair for the short tandem repeat (STR) D12S391 which makes it possible to obtain considerably shorter amplification fragments (125-173 bp), compared to the previously published primers (205-253 bp). The primers were tested on 70 samples with known genotypes, and no differing results were found. In sensitivity studies, forensic casework samples and DNA quality studies, we proved that the new primers can improve the efficiency of the amplification. Moreover, the resolution of this locus on denaturing PAGE followed by silver staining was dramatically improved. This improvement was found to be most valuable for typing the rare.3 variants known for this locus. We also present and propose a new method for silver staining denaturing acrylamide gels.

摘要

在本文中,我们描述了一种用于短串联重复序列(STR)D12S391的新型引物对,与先前发表的引物(205 - 253 bp)相比,它能够获得明显更短的扩增片段(125 - 173 bp)。这些引物在70个已知基因型的样本上进行了测试,未发现不同结果。在灵敏度研究、法医案件样本和DNA质量研究中,我们证明了新引物可以提高扩增效率。此外,变性聚丙烯酰胺凝胶电泳(PAGE)后银染时该位点的分辨率得到了显著提高。发现这种改进对于鉴定该位点已知的罕见.3变体最有价值。我们还提出了一种用于银染变性丙烯酰胺凝胶的新方法。

相似文献

1
Modified primers for D12S391 and a modified silver staining technique.用于D12S391的改良引物及改良银染技术。
Int J Legal Med. 1999;112(5):342-4. doi: 10.1007/s004140050267.
2
Analysis and interpretation of short tandem repeat microvariants and three-banded allele patterns using multiple allele detection systems.使用多等位基因检测系统对短串联重复微变体和三带等位基因模式进行分析与解读。
J Forensic Sci. 1999 Jan;44(1):87-94.
3
[Polymorphism of STR loci D12S391/D18S865 in Wenzhou Han population].
Fa Yi Xue Za Zhi. 2004;20(2):85-7.
4
[Polymorphisms of five short tandem repeat systems in Chinese Zang population in Kangba area].
Sichuan Da Xue Xue Bao Yi Xue Ban. 2004 Jan;35(1):21-4.
5
Additional variability at the D12S391 STR locus in an Austrian population sample: sequencing data and allele distribution.
Forensic Sci Int. 1997 Dec 1;90(3):197-203. doi: 10.1016/s0379-0738(97)00163-1.
6
Typing Y chromosome STR haplotypes using redesigned primers.使用重新设计的引物对Y染色体短串联重复序列单倍型进行分型。
J Forensic Sci. 2002 Jan;47(1):215-7.
7
General approach to analysis of polymorphic short tandem repeat loci.多态性短串联重复序列位点分析的一般方法。
Biotechniques. 1996 Feb;20(2):266-76. doi: 10.2144/96202rr04.
8
Sequence variation of a hypervariable short tandem repeat at the D12S391 locus.
Gene. 1996 Dec 5;182(1-2):151-3. doi: 10.1016/s0378-1119(96)00540-9.
9
Polymorphism of the D12S66 system in the Japanese population and its detection using degraded DNA.
Bull Tokyo Dent Coll. 2000 Feb;41(1):15-20. doi: 10.2209/tdcpublication.41.15.
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[A multiplex for simultaneous amplification of three Y-STR loci using modified primers].[一种使用修饰引物同时扩增三个Y染色体短串联重复序列(Y-STR)基因座的多重PCR方法]
Sichuan Da Xue Xue Bao Yi Xue Ban. 2005 Jan;36(1):17-9.

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