Patel A B, Srivastava S, Coutinho E, Phadke R S
Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400 005, India.
Biopolymers. 1999 Nov;50(6):602-12. doi: 10.1002/(SICI)1097-0282(199911)50:6<602::AID-BIP5>3.0.CO;2-N.
The conformation of [Tyr(8)]SP (Y8SP) in dimethylsulfoxide (DMSO), water, and dipalmitoyl phosphatidylcholine (DPPC) bilayers has been investigated by two-dimensional nmr and molecular dynamics simulations. Molecular modeling of the conformation of Y8SP by incorporating nuclear Overhauser effects as distance restraints shows wide differences in its conformation in the three media. In DMSO, the main structural features are gamma-bends along with a nonspecific bend around Gln(6)-Phe(7)-Tyr(8). The random coil structure seen in water is transformed into a beta-turn around the segment Gln(5)-Gln(6)-Phe(7)-Tyr(8) when Y8SP is incorporated into DPPC bilayers. The lower biological activity of Y8SP compared to the native peptide (SP) has been attributed to the absence of any helix like structure at the central residues, a feature shown to be an important prerequisite for SP and SP agonists to bind to the neurokinin 1 tachykinin receptor.
通过二维核磁共振和分子动力学模拟研究了[酪氨酸(8)]速激肽(Y8SP)在二甲基亚砜(DMSO)、水和二棕榈酰磷脂酰胆碱(DPPC)双层膜中的构象。通过纳入核Overhauser效应作为距离限制对Y8SP构象进行分子建模,结果显示其在三种介质中的构象存在很大差异。在DMSO中,主要结构特征是γ-弯曲以及围绕Gln(6)-Phe(7)-Tyr(8)的非特异性弯曲。当Y8SP掺入DPPC双层膜时,在水中观察到的无规卷曲结构转变为围绕Gln(5)-Gln(6)-Phe(7)-Tyr(8)片段的β-转角。与天然肽(SP)相比,Y8SP的生物活性较低,这归因于中央残基处不存在任何螺旋样结构,该特征被证明是SP和SP激动剂与神经激肽1速激肽受体结合的重要前提。