Rao V, Cui T, Guan C, Van Roey P
Division of Molecular Medicine, Wadsworth Center, New York State Department of Health, Albany 12201-0509, USA.
Protein Sci. 1999 Nov;8(11):2338-46. doi: 10.1110/ps.8.11.2338.
Endo-beta-N-acetylglucosaminidase H hydrolyzes the beta-(1-4)-glycosidic link of the N,N'-diacetylchitobiose core of high-mannose and hybrid asparagine-linked oligosaccharides. Seven mutants of the active site residues, Asp130 and Glu132, have been prepared, assayed, and crystallized. They include single site mutants of each residue to the corresponding amide, to Ala and to the alternate acidic residue, and to the double amide mutant. The mutants of Asp130 are more active than the corresponding Glu132 mutants, consistent with the assignment of the latter residue as the primary catalytic residue. The amide mutants are more active than the alternate acidic residue mutants, which in turn are more active than the Ala mutants. The structures of the Asn mutant of Asp130 and the double mutant are very similar to that of the wild-type enzyme. Several residues surrounding the mutated residues, including some that form part of the core of the beta-barrel and especially Tyr168 and Tyr244, adopt a very different conformation in the structures of the other two mutants of Asp130 and in the Asp mutant of Glu132. The results show that the residues in the upper layers of the beta-barrel can organize into two very distinct packing arrangements that depend on subtle electrostatic and steric differences and that greatly affect the geometry of the substrate-binding cleft. Consequently, the relative activities of several of the mutants are defined by structural changes, leading to impaired substrate binding, in addition to changes in functionality.
内切β-N-乙酰氨基葡糖苷酶H可水解高甘露糖型和杂合型天冬酰胺连接寡糖的N,N'-二乙酰壳二糖核心的β-(1-4)-糖苷键。已制备、检测并结晶了活性位点残基Asp130和Glu132的7个突变体。它们包括每个残基分别突变为相应酰胺、丙氨酸和另一种酸性残基的单一位点突变体,以及双酰胺突变体。Asp130的突变体比相应的Glu132突变体更具活性,这与将后一个残基指定为主要催化残基一致。酰胺突变体比另一种酸性残基突变体更具活性,而后者又比丙氨酸突变体更具活性。Asp130的天冬酰胺突变体和双突变体的结构与野生型酶的结构非常相似。在Asp130的其他两个突变体和Glu132的Asp突变体的结构中,突变残基周围的几个残基,包括一些构成β-桶核心一部分的残基,特别是Tyr168和Tyr244,呈现出非常不同的构象。结果表明,β-桶上层的残基可以组织成两种非常不同的堆积排列,这取决于细微的静电和空间差异,并且极大地影响底物结合裂隙的几何形状。因此,除了功能变化外,几个突变体的相对活性还由导致底物结合受损的结构变化所定义。