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通过半胱氨酸置换在丝状噬菌体上展示Ras

Display of Ras on filamentous phage through cysteine replacement.

作者信息

Wind T, Kjaer S, Clark B F

机构信息

University of Aarhus, Department of Molecular and Structural Biology, Denmark.

出版信息

Biochimie. 1999 Dec;81(12):1079-87. doi: 10.1016/s0300-9084(99)00354-5.

DOI:10.1016/s0300-9084(99)00354-5
PMID:10607402
Abstract

Phage display technology has been used in a variety of contexts to understand and manipulate biomolecular interactions between proteins and other biomolecules. In this paper we describe the establishment of a phage display system for elucidation of the interactions between the GTPase Ras and its panel of effectors. It is shown how technical problems associated with phage display of a protein with unpaired cysteines, likely to be caused by the oxidizing environment of the bacterial periplasm into which the protein is directed, can be overcome by cysteine replacement based on functional and structural studies. First, the catalytic domain (residues 1-166) of mammalian H-Ras (Ras) was observed to be displayed on phage in an incorrect conformation not detectable by antibodies recognizing conformational epitopes on Ras. Although truncation of the phage coat protein used as fusion partner (g3p) resulted in minor improvements in the display, Ras was tailored for phage display by cysteine replacement. By replacing the three cysteines at positions 51, 80 and 118 of Ras with the corresponding residues in Saccharomyces cerevisiae RAS1, the resulting fusion-phage is recognized by the conformation-dependent anti-Ras antibodies. Furthermore, display of cysteine-free Ras is demonstrated by GTP-analogue dependent binding to the Ras-binding domain of the Ras-effector Raf1. These data pave the way for analysis of Ras-effector interactions using phage display technology yet demonstrate that phage display of proteins with normally reduced cysteines should be approached with caution.

摘要

噬菌体展示技术已在多种情况下用于理解和操纵蛋白质与其他生物分子之间的生物分子相互作用。在本文中,我们描述了一种用于阐明GTP酶Ras与其效应器组之间相互作用的噬菌体展示系统的建立。结果表明,基于功能和结构研究,通过半胱氨酸置换可以克服与具有未配对半胱氨酸的蛋白质的噬菌体展示相关的技术问题,这些问题可能是由蛋白质定向进入的细菌周质的氧化环境引起的。首先,观察到哺乳动物H-Ras(Ras)的催化结构域(第1-166位残基)以一种无法被识别Ras上构象表位的抗体检测到的错误构象展示在噬菌体上。尽管用作融合伴侣的噬菌体外壳蛋白(g3p)的截短在展示方面有轻微改善,但通过半胱氨酸置换对Ras进行了噬菌体展示定制。通过将Ras第51、80和118位的三个半胱氨酸替换为酿酒酵母RAS1中的相应残基,得到的融合噬菌体被构象依赖性抗Ras抗体识别。此外,通过与Ras效应器Raf1的Ras结合结构域的GTP类似物依赖性结合证明了无半胱氨酸Ras的展示。这些数据为使用噬菌体展示技术分析Ras-效应器相互作用铺平了道路,但也表明对通常具有减少的半胱氨酸的蛋白质进行噬菌体展示时应谨慎行事。

相似文献

1
Display of Ras on filamentous phage through cysteine replacement.通过半胱氨酸置换在丝状噬菌体上展示Ras
Biochimie. 1999 Dec;81(12):1079-87. doi: 10.1016/s0300-9084(99)00354-5.
2
Determinants of Ras proteins specifying the sensitivity to yeast Ira2p and human p120-GAP.决定Ras蛋白对酵母Ira2p和人类p120-GAP敏感性的因素。
EMBO J. 1996 Mar 1;15(5):1107-11.
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Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins.关于Raf-1的Ras结合结构域与野生型及突变型Ras蛋白相互作用的核磁共振和分子动力学研究。
J Mol Biol. 1999 Feb 12;286(1):219-32. doi: 10.1006/jmbi.1998.2472.
4
Domain shuffling as a tool for investigation of protein function: substitution of the cysteine-rich region of Raf kinase and PKC eta for that of yeast Pkc1p.结构域改组作为研究蛋白质功能的一种工具:用酵母Pkc1p的富含半胱氨酸区域替换Raf激酶和PKC η的相应区域。
J Mol Biol. 2001 Aug 3;311(1):1-7. doi: 10.1006/jmbi.2001.4848.
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Crystal structure of M-Ras reveals a GTP-bound "off" state conformation of Ras family small GTPases.M-Ras的晶体结构揭示了Ras家族小GTP酶的一种结合GTP的“关闭”状态构象。
J Biol Chem. 2005 Sep 2;280(35):31267-75. doi: 10.1074/jbc.M505503200. Epub 2005 Jun 30.
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Ras-Raf interaction: two-hybrid analysis.Ras与Raf的相互作用:双杂交分析。
Methods Enzymol. 1995;255:331-42. doi: 10.1016/s0076-6879(95)55036-4.
7
Methods to study the Ras2 protein activation state and the subcellular localization of Ras-GTP in Saccharomyces cerevisiae.研究酿酒酵母中Ras2蛋白激活状态及Ras-GTP亚细胞定位的方法。
Methods Mol Biol. 2014;1120:391-405. doi: 10.1007/978-1-62703-791-4_24.
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Differential structural requirements for interaction of Ras protein with its distinct downstream effectors.Ras蛋白与其不同下游效应器相互作用的差异结构要求。
J Biol Chem. 1996 Mar 8;271(10):5353-60. doi: 10.1074/jbc.271.10.5353.
9
Novel, activated RAS mutations alter protein-protein interactions.新型激活型RAS突变会改变蛋白质-蛋白质相互作用。
Oncogene. 1996 Sep 19;13(6):1209-20.
10
Interaction of Ras with Raf (residues 136-189) and related cysteine-rich protein fragments.Ras与Raf(第136 - 189位氨基酸残基)及相关富含半胱氨酸蛋白片段的相互作用。
Biochem Soc Trans. 1997 Aug;25(3):511S. doi: 10.1042/bst025511s.

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