Wind T, Kjaer S, Clark B F
University of Aarhus, Department of Molecular and Structural Biology, Denmark.
Biochimie. 1999 Dec;81(12):1079-87. doi: 10.1016/s0300-9084(99)00354-5.
Phage display technology has been used in a variety of contexts to understand and manipulate biomolecular interactions between proteins and other biomolecules. In this paper we describe the establishment of a phage display system for elucidation of the interactions between the GTPase Ras and its panel of effectors. It is shown how technical problems associated with phage display of a protein with unpaired cysteines, likely to be caused by the oxidizing environment of the bacterial periplasm into which the protein is directed, can be overcome by cysteine replacement based on functional and structural studies. First, the catalytic domain (residues 1-166) of mammalian H-Ras (Ras) was observed to be displayed on phage in an incorrect conformation not detectable by antibodies recognizing conformational epitopes on Ras. Although truncation of the phage coat protein used as fusion partner (g3p) resulted in minor improvements in the display, Ras was tailored for phage display by cysteine replacement. By replacing the three cysteines at positions 51, 80 and 118 of Ras with the corresponding residues in Saccharomyces cerevisiae RAS1, the resulting fusion-phage is recognized by the conformation-dependent anti-Ras antibodies. Furthermore, display of cysteine-free Ras is demonstrated by GTP-analogue dependent binding to the Ras-binding domain of the Ras-effector Raf1. These data pave the way for analysis of Ras-effector interactions using phage display technology yet demonstrate that phage display of proteins with normally reduced cysteines should be approached with caution.
噬菌体展示技术已在多种情况下用于理解和操纵蛋白质与其他生物分子之间的生物分子相互作用。在本文中,我们描述了一种用于阐明GTP酶Ras与其效应器组之间相互作用的噬菌体展示系统的建立。结果表明,基于功能和结构研究,通过半胱氨酸置换可以克服与具有未配对半胱氨酸的蛋白质的噬菌体展示相关的技术问题,这些问题可能是由蛋白质定向进入的细菌周质的氧化环境引起的。首先,观察到哺乳动物H-Ras(Ras)的催化结构域(第1-166位残基)以一种无法被识别Ras上构象表位的抗体检测到的错误构象展示在噬菌体上。尽管用作融合伴侣的噬菌体外壳蛋白(g3p)的截短在展示方面有轻微改善,但通过半胱氨酸置换对Ras进行了噬菌体展示定制。通过将Ras第51、80和118位的三个半胱氨酸替换为酿酒酵母RAS1中的相应残基,得到的融合噬菌体被构象依赖性抗Ras抗体识别。此外,通过与Ras效应器Raf1的Ras结合结构域的GTP类似物依赖性结合证明了无半胱氨酸Ras的展示。这些数据为使用噬菌体展示技术分析Ras-效应器相互作用铺平了道路,但也表明对通常具有减少的半胱氨酸的蛋白质进行噬菌体展示时应谨慎行事。