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[群体谱系结构分析。II. 利用数字谱系计算近亲繁殖系数]

[Analysis of genealogical structure of populations. II. The use od numerical pedigrees for calculation of inbreeding coefficient].

作者信息

Pasekov V P

机构信息

Computing Center, Russian Academy of Sciences, Moscow, Russia.

出版信息

Genetika. 2000 Feb;36(2):257-65.

Abstract

A method for calculation of inbreeding coefficient F in a numerical pedigree with no reference to its graphic representation is suggested. For calculation of F, a formula that does not take into account inbreeding coefficients of common ancestors and admits intersections in a loop is used. An advantage of this method is that it automatically finds all loops formed by paths to common ancestors. Detecting these loops via their tracing in a graphic pedigree with intersecting lines of descent creates a possibility of errors. A criterion of existence of at least one common link for two numerical paths is presented. It enables one to exclude pairs of paths to common ancestors that do not form loops. The methods considered for computing F in a given pedigree give exact values of the inbreeding coefficient for autosomal and sex-linked loci and generalize the known approximate approaches. The methods are illustrated by examples.

摘要

提出了一种在不参考数值谱系图形表示的情况下计算近亲繁殖系数F的方法。为了计算F,使用了一个不考虑共同祖先近亲繁殖系数且允许循环中存在交叉的公式。该方法的一个优点是它能自动找到由通向共同祖先的路径形成的所有循环。通过在具有相交后代线的图形谱系中追踪这些循环来检测它们,有可能产生错误。提出了两条数值路径至少存在一个共同链接的标准。它使人们能够排除不形成循环的通向共同祖先的路径对。所考虑的在给定谱系中计算F的方法给出了常染色体和性连锁基因座近亲繁殖系数的精确值,并推广了已知的近似方法。通过示例对这些方法进行了说明。

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