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通过核磁共振氢谱监测的葡萄球菌核酸酶的压力-温度自由能景观。

The pressure-temperature free energy-landscape of staphylococcal nuclease monitored by (1)H NMR.

作者信息

Lassalle M W, Yamada H, Akasaka K

机构信息

Department of Molecular Science, Graduate School of Science and Technology, Kobe University, 1-1 Rokkodai-cho, Kobe, Nada-ku, 657-8501, Japan.

出版信息

J Mol Biol. 2000 Apr 28;298(2):293-302. doi: 10.1006/jmbi.2000.3659.

DOI:10.1006/jmbi.2000.3659
PMID:10764598
Abstract

The thermodynamic stability of staphylococcal nuclease was studied against the variation of both temperature and pressure by utilizing (1)H NMR spectroscopy at 750 MHz in 20 mM Mes buffer containing 99.9 % (2)H(2)O, pH 5.3. Equilibrium fractions of folded and unfolded protein species were evaluated with the proton signals of two histidine residues as monitor in the pressure range of 30-3300 bar and in the temperature range of 1.5 degrees C-35 degrees C. From the multi-parameter fit of the experimental data to the Gibbs energy equation expressed as a simultaneous function of pressure and temperature, we determined the compressibility change (Deltabeta), the volume change at 1 bar (DeltaV degrees ) and the expansivity change (Deltaalpha) upon unfolding among other thermodynamic parameters: Deltabeta=0.02(+/-0.003) ml mol(-1) bar(-1); Deltaalpha=1.33(+/-0.2) ml mol(-1) K(-1); DeltaV degrees =-41.9(+/-6. 3) ml mol(-1) (at 24 degrees C); DeltaG degrees =13.18(+/-2) kJ mol(-1) (at 24 degrees C); DeltaC(p)=13.12(+/-2) kJ mol(-1) K(-1); DeltaS degrees =0.32(+/-0.05) kJ mol(-1) K(-1 )(at 24 degrees C). The result yields a three-dimensional free energy surface, i.e. the free energy-landscape of staphylococcal nuclease on the P-T plane. The significantly positive Deltabeta and Deltaalpha values suggest that, in the pressure-denatured state, staphylococcal nuclease forms a loosely packed and fluctuating structure. The slight but statistically significant difference between the unfolding transitions of the His8 and His124 environments is considered to reflect local fluctuations in the native state, leading to pre-melting of the His124 environment prior to the cooperative unfolding of the major part of the protein.

摘要

通过在750 MHz下利用(1)H NMR光谱,在含有99.9 % (2)H(2)O、pH 5.3的20 mM Mes缓冲液中,研究了葡萄球菌核酸酶在温度和压力变化下的热力学稳定性。在30 - 3300 bar的压力范围和1.5℃ - 35℃的温度范围内,以两个组氨酸残基的质子信号作为监测指标,评估折叠和未折叠蛋白质物种的平衡分数。通过将实验数据对表示为压力和温度同时函数的吉布斯能量方程进行多参数拟合,我们确定了除其他热力学参数外展开时的压缩率变化(Deltabeta)、1 bar下的体积变化(DeltaV度)和膨胀率变化(Deltaalpha):Deltabeta = 0.02(±0.003) ml mol(-1) bar(-1);Deltaalpha = 1.33(±0.2) ml mol(-1) K(-1);DeltaV度 = -41.9(±6.3) ml mol(-1)(在24℃);DeltaG度 = 13.18(±2) kJ mol(-1)(在24℃);DeltaC(p) = 13.12(±2) kJ mol(-1) K(-1);DeltaS度 = 0.32(±0.05) kJ mol(-1) K(-1)(在24℃)。结果得出了一个三维自由能表面,即葡萄球菌核酸酶在P - T平面上的自由能景观。显著正的Deltabeta和Deltaalpha值表明,在压力变性状态下,葡萄球菌核酸酶形成了一种松散堆积且波动的结构。His8和His124环境的展开转变之间轻微但具有统计学意义的差异被认为反映了天然状态下的局部波动,导致在蛋白质主要部分协同展开之前His124环境的预熔解。

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