相似文献
1
Unpaired bases in superhelical DNA: kinetic evidence.
Nucleic Acids Res. 1974 Apr;1(4):549-58. doi: 10.1093/nar/1.4.549.
2
Influence of supercoiling on the disruption of dsDNA.
J Chem Phys. 2005 Sep 22;123(12):124901. doi: 10.1063/1.2042367.
3
Extrusion of an imperfect palindrome to a cruciform in superhelical DNA: complete determination of energetics using a statistical mechanical model.
J Mol Biol. 2002 Feb 22;316(3):563-81. doi: 10.1006/jmbi.2001.5361.
4
Formation of Cu(II)-brazilin complex in the presence of DNA and its activities as chemical nuclease.
J Inorg Biochem. 2006 Sep;100(9):1501-5. doi: 10.1016/j.jinorgbio.2006.04.013. Epub 2006 May 10.
5
Supercoiling induces denaturation bubbles in circular DNA.
Phys Rev Lett. 2010 Nov 12;105(20):208101. doi: 10.1103/PhysRevLett.105.208101. Epub 2010 Nov 11.
6
Long (dA)n.(dT)n tracts can form intramolecular triplexes under superhelical stress.
Nucleic Acids Res. 1990 Sep 25;18(18):5387-91. doi: 10.1093/nar/18.18.5387.
7
DNA supercoiling, shortening, and induction of single-strand regions by cis-diamminedichloroplatinum(II).
Cancer Res. 1981 Oct;41(10):4020-6.
8
Extracellular nucleases of Alteromonas espejiana BAL 31.IV. The single strand-specific deoxyriboendonuclease activity as a probe for regions of altered secondary structure in negatively and positively supercoiled closed circular DNA.
Nucleic Acids Res. 1979 Jan;6(1):331-57. doi: 10.1093/nar/6.1.331.
9
Monte Carlo implementation of supercoiled double-stranded DNA.
Biophys J. 2000 Apr;78(4):1979-87. doi: 10.1016/S0006-3495(00)76745-2.
10
Internal dynamics of superhelical DNA.
Phys Rev Lett. 2008 Mar 7;100(9):098102. doi: 10.1103/PhysRevLett.100.098102. Epub 2008 Mar 6.
引用本文的文献
1
Understanding and Simulating the Dynamics of a Polymer-Like Chromatin.
Methods Mol Biol. 2025;2873:283-302. doi: 10.1007/978-1-0716-4228-3_16.
2
Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.
Phys Rev Lett. 2011 Sep 2;107(10):108102. doi: 10.1103/PhysRevLett.107.108102. Epub 2011 Sep 1.
3
An RNA fraction in chromatin of L-929 cells associated with DNA.
Nucleic Acids Res. 1974 Nov;1(11):1421-37. doi: 10.1093/nar/1.11.1421.
4
Introduction of interrupted secondary structure in supercoiled DNA as a function of superhelix density: consideration of hairpin structures in superhelical DNA.
J Virol. 1976 Apr;18(1):195-204. doi: 10.1128/JVI.18.1.195-204.1976.
5
Carbodiimide modification of superhelical PM2 DNA: considerations regarding reaction at unpaired bases and the unwinding of superhelical DNA with chemical probes.
Nucleic Acids Res. 1977 Jun;4(6):1695-711. doi: 10.1093/nar/4.6.1695.
6
Ultraviolet light irradiation of PM2 superhelical DNA.
Nucleic Acids Res. 1977;4(5):1243-56. doi: 10.1093/nar/4.5.1243.
7
Extracellular nucleases of Alteromonas espejiana BAL 31.IV. The single strand-specific deoxyriboendonuclease activity as a probe for regions of altered secondary structure in negatively and positively supercoiled closed circular DNA.
Nucleic Acids Res. 1979 Jan;6(1):331-57. doi: 10.1093/nar/6.1.331.
8
Inhibition of transcription of supercoiled PM2 DNA by carbodiimide modification.
Nucleic Acids Res. 1977 Jun;4(6):1713-26. doi: 10.1093/nar/4.6.1713.
本文引用的文献
1
On the kinetics of hydrogen exchange in deoxyribonucleic acid. pH and salt effects.
Biochemistry. 1968 Sep;7(9):3194-206. doi: 10.1021/bi00849a023.
2
Kinetic studies of denaturation and reaction with formaldehyde on polydeoxyribonucleotides.
Biochemistry. 1971 Mar 30;10(7):1254-64. doi: 10.1021/bi00783a024.
3
Hydrogen exchange as a probe of the dynamic structure of DNA. I. General acid-base catalysis.
J Mol Biol. 1970 Jun 14;50(2):297-316. doi: 10.1016/0022-2836(70)90194-4.
4
Tritium-hydrogen exchange studies of polynucleotides. Double-stranded polyriboadenylic acid.
Biochemistry. 1970 Jul 21;9(15):3077-87. doi: 10.1021/bi00817a022.
5
Hydrogen exchange in proteins.
Adv Protein Chem. 1966;21:287-386. doi: 10.1016/s0065-3233(08)60129-1.
6
Dynamic aspects of native DNA structure: kinetics of the formaldehyde reaction with calf thymus DNA.
J Mol Biol. 1971 Nov 14;61(3):587-613. doi: 10.1016/0022-2836(71)90066-0.
7
Slow exchange of the "outside" amino hydrogens of DNA.
J Mol Biol. 1972 Jan 14;63(1):171-7. doi: 10.1016/0022-2836(72)90528-1.
8
Studies on the secondary structure of phenylalanyl transfer ribonucleic acid.
Biochemistry. 1970 Dec 8;9(25):4971-80. doi: 10.1021/bi00827a022.
9
Further analysis of the altered secondary structure of superhelical DNA. Sensitivity to methylmercuric hydroxide a chemical probe for unpaired bases.
J Mol Biol. 1973 Sep 25;79(3):451-70. doi: 10.1016/0022-2836(73)90398-7.
10
A study of rapid hydrogen exchange in nucleic acids.
J Mol Biol. 1971 Jun 28;58(3):847-63.
Zotero 插件