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通过核磁共振研究胶原蛋白三螺旋的水合动力学

Hydration dynamics of the collagen triple helix by NMR.

作者信息

Melacini G, Bonvin A M, Goodman M, Boelens R, Kaptein R

机构信息

NMR Department, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, CH, NL-3508, The Netherlands.

出版信息

J Mol Biol. 2000 Jul 28;300(5):1041-9. doi: 10.1006/jmbi.2000.3919.

Abstract

The hydration of the collagen-like Ac-(Gly-Pro-Hyp)(6)-NH(2) triple-helical peptide in solution was investigated using an integrated set of high-resolution NMR hydration experiments, including different recently developed exchange-network editing methods. This approach was designed to explore the hydration dynamics in the proximity of labile groups, such as the hydroxyproline hydroxyl group, and revealed that the first shell of hydration in collagen-like triple helices is kinetically labile with upper limits for water molecule residence times in the nanosecond to sub-nanosecond range. This result is consistent with a "hopping" hydration model in which solvent molecules are exchanged in and out of solvation sites at a rate that is not directly correlated to the degree of site localization. The hopping model thus reconciles the dynamic view of hydration revealed by NMR with the previously suggested partially ordered semi-clathrate-like cylinder of hydration. In addition, the nanosecond to sub-nanosecond upper limits for water molecule residence times imply that hydration-dehydration events are not likely to be the rate-limiting step for triple helix self-recognition, complementing previous investigations on water dynamics in collagen fibers. This study has also revealed labile proton features expected to facilitate the characterization of the structure and folding of triple helices in collagen peptides.

摘要

利用一套综合的高分辨率核磁共振水合实验,包括最近开发的不同交换网络编辑方法,研究了溶液中类胶原蛋白Ac-(Gly-Pro-Hyp)(6)-NH(2)三螺旋肽的水合作用。该方法旨在探索不稳定基团(如羟脯氨酸羟基)附近的水合动力学,结果表明,类胶原蛋白三螺旋中的第一水合层在动力学上不稳定,水分子的停留时间上限在纳秒到亚纳秒范围内。这一结果与“跳跃”水合模型一致,在该模型中,溶剂分子以与位点定位程度不直接相关的速率进出溶剂化位点。因此,跳跃模型将核磁共振揭示的水合动态观点与先前提出的部分有序的半笼状水合圆柱体协调起来。此外,水分子停留时间的纳秒到亚纳秒上限意味着水合-脱水事件不太可能是三螺旋自我识别的限速步骤,这补充了先前对胶原纤维中水动力学的研究。这项研究还揭示了预期有助于表征胶原肽中三螺旋结构和折叠的不稳定质子特征。

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