Uchida T, Ishimori K, Morishima I
Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Kyoto 606-8501, Japan.
J Biol Chem. 2000 Sep 29;275(39):30309-16. doi: 10.1074/jbc.M910287199.
Using high pressure flash photolysis, we revealed that the side chain of Leu(29) controls the reaction volume of the ligand migration process in myoglobin, which is the primary factor for the unusual activation volume of ligand binding in some Leu(29) mutants. As we previously reported (Adachi, S., Sunohara, N., Ishimori, K., and Morishima, I. (1992) J. Biol. Chem. 267, 12614-12621), CO bimolecular rebinding in the L29A mutant was unexpectedly decelerated by pressurization, suggesting that the rate-determining step is switched to ligand migration. However, very slow CO bimolecular rebinding of the mutants implies that bond formation is still the rate-determining step. To gain further insights into effects of the side chain on ligand binding, we prepared some new Leu(29) mutants to measure the CO and O(2) rebinding reaction rates under high hydrostatic pressure. CO bimolecular rebinding in the mutants bearing Gly or Ser at position 29 was also decelerated upon pressurization, resulting in apparent positive activation volumes (DeltaV), as observed for O(2) binding. Based on the three-state model, we concluded that the increased space available to ligands in these mutants enhances the volume difference between the geminate and deoxy states (DeltaV(32)), which shifts the apparent activation volume to the positive side, and that the apparent positive activation volume is not due to contribution of the ligand migration process to the rate-determining step.
通过高压闪光光解,我们发现亮氨酸(Leu)29的侧链控制着肌红蛋白中配体迁移过程的反应体积,这是一些Leu29突变体中配体结合异常活化体积的主要因素。正如我们之前报道的(安达智、园原直、石森健和森岛一(1992年)《生物化学杂志》267卷,第12614 - 12621页),L29A突变体中CO的双分子重结合在加压时意外减速,这表明速率决定步骤转变为配体迁移。然而,这些突变体中非常缓慢的CO双分子重结合意味着键形成仍然是速率决定步骤。为了进一步深入了解侧链对配体结合的影响,我们制备了一些新的Leu29突变体,以测量在高静水压力下CO和O₂的重结合反应速率。在29位带有甘氨酸或丝氨酸的突变体中,CO的双分子重结合在加压时也会减速,导致出现明显的正活化体积(ΔV),这与O₂结合时的情况相同。基于三态模型,我们得出结论,这些突变体中配体可利用空间的增加增强了双生态和脱氧态之间的体积差(ΔV₃₂),这使得表观活化体积向正值方向移动,并且表观正活化体积并非由于配体迁移过程对速率决定步骤的贡献。