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通过淬灭标量耦合介导的弛豫增强灵敏度的核磁共振光谱法:应用于直接观测13C/15N标记蛋白质中的氢键

Sensitivity enhanced NMR spectroscopy by quenching scalar coupling mediated relaxation: application to the direct observation of hydrogen bonds in 13C/15N-labeled proteins.

作者信息

Liu A, Hu W, Qamar S, Majumdar A

机构信息

Cellular Biochemistry & Biophysics Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10021, USA.

出版信息

J Biomol NMR. 2000 May;17(1):55-61. doi: 10.1023/a:1008340116418.

DOI:10.1023/a:1008340116418
PMID:10909866
Abstract

In this paper, we demonstrate that the sensitivity of triple-resonance NMR experiments can be enhanced significantly through quenching scalar coupling mediated relaxation by using composite-pulse decoupling (CPD) or.an adiabatic decoupling sequence on aliphatic, in particular alpha-carbons in 13C/15N-labeled proteins. The CPD-HNCO experiment renders 50% sensitivity enhancement over the conventional CT-HNCO experiment performed on a 12 kDa FK506 binding protein, when a total of 266 ms of amide nitrogen-carbonyl carbon defocusing and refocusing periods is employed. This is a typical time period for the direct detection of hydrogen bonds in proteins via trans-hydrogen bond 3hJ(NC') couplings. The experimental data fit theoretical analysis well. The significant enhancement in sensitivity makes the experiment more applicable to larger-sized proteins without resorting to perdeuteration.

摘要

在本文中,我们证明了通过使用复合脉冲去耦(CPD)或绝热去耦序列淬灭标量耦合介导的弛豫,可以显著提高三共振核磁共振实验的灵敏度,该实验针对13C/15N标记蛋白质中的脂肪族,特别是α-碳原子。当总共使用266 ms的酰胺氮-羰基碳散焦和重聚焦周期时,CPD-HNCO实验相对于在12 kDa FK506结合蛋白上进行的传统CT-HNCO实验,灵敏度提高了50%。这是通过反式氢键3hJ(NC')耦合直接检测蛋白质中氢键的典型时间段。实验数据与理论分析吻合良好。灵敏度的显著提高使得该实验更适用于更大尺寸的蛋白质,而无需采用全氘代。

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2
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本文引用的文献

1
NMR experiments for resonance assignments of 13C, 15N doubly-labeled flexible polypeptides: application to the human prion protein hPrP(23-230).用于13C、15N双标记柔性多肽共振归属的核磁共振实验:应用于人类朊病毒蛋白hPrP(23 - 230)
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Measurement of 3hJNC' connectivities across hydrogen bonds in a 30 kDa protein.测量30 kDa蛋白质中氢键上的3hJNC'连接性。
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TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins.
J Biomol NMR. 2000 Aug;17(4):305-10. doi: 10.1023/a:1008390813387.
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Detection of very weak side chain-main chain hydrogen bonding interactions in medium-size 13C/15N-labeled proteins by sensitivity-enhanced NMR spectroscopy.通过灵敏度增强核磁共振光谱法检测中等大小的13C/15N标记蛋白质中非常弱的侧链-主链氢键相互作用。
J Biomol NMR. 2000 May;17(1):79-82. doi: 10.1023/a:1008373501591.
三共振实验中的TROSY:大蛋白质序列核磁共振归属的新视角
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Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.通过偶极-偶极耦合和化学位移各向异性的相互抵消而导致的T2弛豫减弱,为溶液中非常大的生物大分子的核磁共振结构提供了一条途径。
Proc Natl Acad Sci U S A. 1997 Nov 11;94(23):12366-71. doi: 10.1073/pnas.94.23.12366.
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Pulse schemes for the measurement of 3JC'C gamma and 3JNC gamma scalar couplings in 15N,13C uniformly labeled proteins.用于测量15N、13C均匀标记蛋白质中3JC'Cγ和3JNCγ标量耦合的脉冲序列。
J Biomol NMR. 1997 Jun;9(4):409-22. doi: 10.1023/a:1018354712430.
6
Chi 1 angle information from a simple two-dimensional NMR experiment that identifies trans 3JNC gamma couplings in isotopically enriched proteins.来自简单二维核磁共振实验的Chi 1角信息,该实验可识别同位素富集蛋白质中的反式3JNCγ偶合。
J Biomol NMR. 1997 Apr;9(3):323-8. doi: 10.1023/a:1018691228238.
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Biochemistry. 1993 Sep 7;32(35):9000-10. doi: 10.1021/bi00086a004.
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Protein dynamics studied by rotating frame 15N spin relaxation times.通过旋转坐标系15N自旋弛豫时间研究蛋白质动力学。
J Biomol NMR. 1993 Mar;3(2):151-64. doi: 10.1007/BF00178259.
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1H, 13C, and 15N assignments and secondary structure of the FK506 binding protein when bound to ascomycin.与子囊霉素结合时FK506结合蛋白的1H、13C和15N归属及二级结构
Biopolymers. 1993 Apr;33(4):535-50. doi: 10.1002/bip.360330404.
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