Arockiasamy A, Krishnaswamy S
Bioinformatics Centre, School of Biotechnology, Madurai Kamaraj University, India.
Anal Biochem. 2000 Jul 15;283(1):64-70. doi: 10.1006/abio.2000.4634.
Extraction of the outer-membrane porin, OmpC, from Salmonella typhi Ty21a was done by using a modified salt-extraction procedure. It was possible to extract only the major outer-membrane protein (OMP) from the crude membrane using this method. Aberrant lipopolysaccharide (LPS) production in the galE mutant Ty21a has resulted in more isoforms of OmpC and subsequently led to anomalous mobility in SDS-PAGE. The purity of the preparation was confirmed by denaturing urea SDS-PAGE and N-terminal sequencing. The major OMP extracts had LPS of both bound and free forms. The free form of LPS could be removed by gel filtration and the bound form, largely, was removed using ion-exchange chromatography and by passing through ultrafiltration devices. This method has been used to extract the native trimer of OmpC, the major OMP, in a large scale, for structure-function studies. S. typhi Ty21a OmpC preparation yielded reproducible diffraction-quality crystals. Extracts of porin from wild-type Escherichia coli HB101, grown under high osmolarity conditions, showed a single species of OMP on SDS-PAGE. This suggests the possible application of the method to other gram-negative bacterial porins.
采用改良的盐提取法从伤寒沙门氏菌Ty21a中提取外膜孔蛋白OmpC。使用该方法仅能从粗膜中提取主要的外膜蛋白(OMP)。galE突变体Ty21a中异常的脂多糖(LPS)产生导致了更多OmpC同工型,进而在SDS-PAGE中导致异常迁移。通过变性尿素SDS-PAGE和N端测序确认了制备物的纯度。主要的OMP提取物含有结合型和游离型的LPS。游离型LPS可通过凝胶过滤去除,结合型LPS大部分可通过离子交换色谱和超滤装置去除。该方法已被用于大规模提取OmpC的天然三聚体(主要的OMP),用于结构功能研究。伤寒沙门氏菌Ty21a OmpC制备物产生了可重复的衍射质量晶体。在高渗透压条件下生长的野生型大肠杆菌HB101的孔蛋白提取物在SDS-PAGE上显示单一的OMP种类。这表明该方法可能适用于其他革兰氏阴性菌孔蛋白。