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通过新型核糖体移码合成噬菌体MB78晚期蛋白。

Synthesis of a bacteriophage MB78 late protein by novel ribosomal frameshifting.

作者信息

Kolla V, Chakravorty M, Pandey B, Srinivasula S M, Mukherjee A, Litwack G

机构信息

Molecular Biology Unit, Institute of Medical Sciences, Banaras Hindu University, 221005, Varanasi, India.

出版信息

Gene. 2000 Aug 22;254(1-2):209-17. doi: 10.1016/s0378-1119(00)00264-x.

DOI:10.1016/s0378-1119(00)00264-x
PMID:10974552
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7173172/
Abstract

MB78 is a virulent phage of Salmonella typhimurium that possesses a number of interesting features, making it a suitable organism to study the regulation of gene expression. A detailed physical map of this phage genome has been constructed and is being extensively studied at the molecular level. Here, we demonstrate the expression of two late proteins of bacteriophage MB78 derived from the same gene as a result of possible ribosomal frameshifting. In vitro transcription-translation yields a major protein that migrates as 28kDa, whereas in vivo expression using pET expression vectors yields two equally expressed proteins of molecular sizes 28 and 26kDa. A putative slippery sequence TTTAAAG and a pseudoknot structure, two essential cis elements required for the classical ribosomal frameshifting, are identified in the reading frame. Mutations created at the slippery sequence resulted in a single 28kDa protein and completely abolished the expression of 26kDa protein. Thus, we have produced the first evidence that ribosomal frameshifting occurs in bacteriophage MB78 of Salmonella typhimurium.

摘要

MB78是鼠伤寒沙门氏菌的一种烈性噬菌体,具有许多有趣的特征,使其成为研究基因表达调控的合适生物体。已构建了该噬菌体基因组的详细物理图谱,并正在分子水平上进行广泛研究。在此,我们证明了噬菌体MB78的两种晚期蛋白源自同一基因,这可能是核糖体移码的结果。体外转录-翻译产生一种主要蛋白,其迁移率为28kDa,而使用pET表达载体的体内表达产生两种分子大小分别为28kDa和26kDa且表达量相同的蛋白。在阅读框中鉴定出一个假定的滑序列TTTAAAG和一个假结结构,这是经典核糖体移码所需的两个必需顺式元件。在滑序列处产生的突变导致单一的28kDa蛋白,并完全消除了26kDa蛋白的表达。因此,我们首次证明了核糖体移码发生在鼠伤寒沙门氏菌的噬菌体MB78中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/f6029ce8c8b6/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/090947849d4d/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/509a931c9dcc/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/15bb1c63343b/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/d1547986143f/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/d1777ba808c6/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/3356689814bf/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/f6029ce8c8b6/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/090947849d4d/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/509a931c9dcc/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/15bb1c63343b/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/d1547986143f/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/d1777ba808c6/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/3356689814bf/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/7173172/f6029ce8c8b6/gr7.jpg

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本文引用的文献

1
Cloning, sequencing, expression and promoter analysis of a structural protein of bacteriophage MB78.噬菌体MB78一种结构蛋白的克隆、测序、表达及启动子分析
Virus Genes. 2000;20(2):149-57. doi: 10.1023/a:1008174732225.
2
Effect of frameshift-inducing mutants of elongation factor 1alpha on programmed +1 frameshifting in yeast.延伸因子1α的移码诱导突变体对酵母中程序性+1移码的影响。
RNA. 1998 Jan;4(1):38-46.
3
Secondary structures and starvation-induced frameshifting.
Mol Microbiol. 1997 Nov;26(4):747-53. doi: 10.1046/j.1365-2958.1997.6101959.x.
4
Base-pairings within the RNA pseudoknot associated with the simian retrovirus-1 gag-pro frameshift site.与猿猴逆转录病毒-1 gag-pro移码位点相关的RNA假结内的碱基配对。
J Mol Biol. 1997 Jul 18;270(3):464-70. doi: 10.1006/jmbi.1997.1127.
5
Identification of a strong promoter of bacteriophage MB78 that lacks consensus sequence around minus 35 region and interacts with phage specific factor.鉴定噬菌体MB78的一个强启动子,该启动子在-35区域周围缺乏共有序列且与噬菌体特异性因子相互作用。
Virus Genes. 1997;14(2):137-46. doi: 10.1023/a:1007969301840.
6
Upstream stimulators for recoding.用于重新编码的上游刺激物。
Biochem Cell Biol. 1995 Nov-Dec;73(11-12):1123-9. doi: 10.1139/o95-121.
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Translational bypassing: a new reading alternative of the genetic code.翻译通读:遗传密码的一种新的阅读替代方式。
Biochem Cell Biol. 1995 Nov-Dec;73(11-12):1055-9. doi: 10.1139/o95-113.
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Astrovirus ribosomal frameshifting in an infection-transfection transient expression system.星状病毒在感染-转染瞬时表达系统中的核糖体移码
J Virol. 1996 May;70(5):2869-75. doi: 10.1128/JVI.70.5.2869-2875.1996.
9
Structural requirements for efficient translational frameshifting in the synthesis of the putative viral RNA-dependent RNA polymerase of potato leafroll virus.马铃薯卷叶病毒假定的病毒RNA依赖性RNA聚合酶合成中高效翻译移码的结构要求。
Nucleic Acids Res. 1993 May 11;21(9):2165-71. doi: 10.1093/nar/21.9.2165.
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Translational repression by the bacteriophage T4 gene 32 protein involves specific recognition of an RNA pseudoknot structure.噬菌体T4基因32蛋白介导的翻译抑制涉及对RNA假结结构的特异性识别。
J Mol Biol. 1993 Jul 5;232(1):89-104. doi: 10.1006/jmbi.1993.1372.