Carpentier P, Berthet-Colominas C, Capitan M, Chesne M L, Fanchon E, Lequien S, Stuhrmann H, Thiaudière D, Vicat J, Zielinski P, Kahn R
Institut de Biologie Structurale Jean-Pierre Ebel, CEA/CNRS, Grenoble, France.
Cell Mol Biol (Noisy-le-grand). 2000 Jul;46(5):915-35.
Anomalous diffraction with soft X-ray synchrotron radiation opens new possibilities in protein crystallography and materials science. Low-Z elements like silicon, phosphorus, sulfur and chlorine become accessible as new labels in structural studies. Some of the heavy elements like uranium exhibit an unusually strong dispersion at their M(V) absorption edge (lambdaMV = 3.497 A, E(MV) = 3545 eV) and so does thorium. Two different test experiments are reported here showing the feasibility of anomalous X-ray diffraction at long wavelengths with a protein containing uranium and with a salt containing chlorine atoms. With 110 electrons the anomalous scattering amplitude of uranium exceeds by a factor of 4 the resonance scattering of other strong anomalous scatterers like that of the lanthanides at their L(III) edge. The resulting exceptional phasing power of uranium is most attractive in protein crystallography using the multi-wavelength anomalous diffraction (MAD) method. The anomalous dispersion of an uranium derivative of asparaginyl-tRNA synthetase (hexagonal unit cell; a = 123.4 A, c = 124.4 A) has been measured for the first time at 4 wavelengths near the M(V) edge using the beamline ID1 of ESRF (Grenoble, France). The present set up allowed to measure only 30% of the possible reflections at a resolution of 4 A, mainly because of the low sensitivity of the CCD detector. In the second experiment, the dispersion of the intensity of 5 X-ray diffraction peaks from pentakismethylammonium undecachlorodibismuthate (PMACB, orthorhombic unit cell; a = 13.003 A, b = 14.038 A, c = 15.450 A) has been measured at 30 wavelengths near the K absorption edge of chlorine (lambdaK = 4.397 A, EK= 2819.6 eV). All reflections within the resolution range from 6.4 A to 3.4 A expected in the 20 degree scan were observed. The chemical state varies between different chlorine atoms of PMACB, and so does the dispersion of different Bragg peaks near the K-edge of chlorine. The results reflect the performance of the beamline ID1 of ESRF at wavelengths beyond 3 A at the end of 1998. A gain by a factor 100 for diffraction experiments with 4.4 A photons was achieved in Autumn 1999 when two focusing mirrors had been added to the X-ray optics. Further progress is expected from area detectors more sensitive to soft X-rays. Both CCD detectors and image plates would provide a gain of two orders of measured intensity. Image plates would have the additional advantage that they can be bent cylindrically and thus cover a larger solid angle in reciprocal space. In many cases, samples need to be cooled: closed and open systems are presented. A comparison with the state of art of soft X-ray diffraction, as it had been reached at HASYLAB (Hamburg, Germany), and as it is developing at the Brookhaven National Laboratory (USA), is given.
利用软X射线同步辐射进行反常衍射为蛋白质晶体学和材料科学带来了新的可能性。像硅、磷、硫和氯这样的低Z元素在结构研究中作为新的标记变得可及。一些重元素如铀在其M(V)吸收边(λMV = 3.497 Å,E(MV) = 3545 eV)表现出异常强烈的色散,钍也是如此。本文报道了两个不同的测试实验,展示了在长波长下对含铀蛋白质和含氯原子盐进行反常X射线衍射的可行性。铀有110个电子,其反常散射振幅比其他强反常散射体如镧系元素在其L(III)边的共振散射大4倍。在蛋白质晶体学中使用多波长反常衍射(MAD)方法时,铀所产生的特殊相位能力极具吸引力。首次使用法国格勒诺布尔欧洲同步辐射装置(ESRF)的ID1光束线,在M(V)边附近的4个波长下测量了天冬酰胺-tRNA合成酶的铀衍生物(六方晶胞;a = 123.4 Å,c = 124.4 Å)的反常色散。目前的装置在4 Å分辨率下仅能测量30%的可能反射,主要是因为电荷耦合器件(CCD)探测器的灵敏度较低。在第二个实验中,在氯的K吸收边(λK = 4.397 Å,EK= 2819.6 eV)附近的30个波长下测量了五甲基铵十一氯二铋酸盐(PMACB,正交晶胞;a = 13.003 Å,b = 14.038 Å,c = 15.450 Å)的5个X射线衍射峰强度的色散。在20度扫描中观察到了分辨率范围从6.4 Å到3.4 Å内预期的所有反射。PMACB中不同氯原子的化学状态不同,氯K边附近不同布拉格峰的色散也不同。这些结果反映了1998年底ESRF的ID1光束线在波长超过3 Å时的性能。1999年秋季,当在X射线光学系统中增加了两个聚焦镜后,对于4.4 Å光子的衍射实验获得了100倍的增益。预计对软X射线更敏感的面探测器会带来进一步进展。CCD探测器和成像板都将使测量强度提高两个数量级。成像板还有额外的优势,即它们可以被弯曲成圆柱形,从而在倒易空间中覆盖更大的立体角。在许多情况下,样品需要冷却:介绍了封闭和开放系统。还与德国汉堡的亥姆霍兹重离子研究中心(HASYLAB)已达到的以及美国布鲁克海文国家实验室正在发展的软X射线衍射技术水平进行了比较。