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远离边缘II:使用铬辐射进行内部硒单波长反常散射法相位分析

Away from the edge II: in-house Se-SAS phasing with chromium radiation.

作者信息

Xu Hao, Yang Cheng, Chen Lirong, Kataeva Irina A, Tempel Wolfram, Lee Doowon, Habel Jeff E, Nguyen Duong, Pflugrath James W, Ferrara Joseph D, Arendall W Bryan, Richardson Jane S, Richardson David C, Liu Zhi Jie, Newton M Gary, Rose John P, Wang Bi Cheng

机构信息

Southeast Collaboratory for Structural Genomics, Department of Biochemistry and Molecular Biology, The University of Georgia, Athens, GA 30605, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):960-6. doi: 10.1107/S0907444905010644. Epub 2005 Jun 24.

Abstract

Recently, the demands of high-throughput macromolecular crystallography have driven continuous improvements in phasing methods, data-collection protocols and many other technologies. Single-wavelength anomalous scattering (SAS) phasing with chromium X-ray radiation opens a new possibility for phasing a protein with data collected in-house and has led to several successful examples of de novo structure solution using only weak anomalous scatterers such as sulfur. To further reduce data-collection time and make SAS phasing more robust, it is natural to combine selenomethionine-derivatized protein (SeMet protein) with Cr Kalpha radiation to take advantage of the larger anomalous scattering signal from selenium (f'' = 2.28 e(-)) compared with sulfur (f'' = 1.14 e(-)). As reported herein, the crystal structure of a putative chorismate mutase from Clostridium thermocellum was determined using Se-SAS with Cr Kalpha radiation. Each protein molecule contains eight selenomethionine residues in 148 amino-acid residues, providing a calculated Bijvoet ratio of about 3.5% at the Cr Kalpha wavelength. A single data set to 2.2 A resolution with approximately ninefold redundancy was collected using an imaging-plate detector coupled with a Cr source. Structure solution, refinement and deposition to the Protein Data Bank were performed within 9 h of the availability of the scaled diffraction data. The procedure used here is applicable to many other proteins and promises to become a routine pathway for in-house high-throughput crystallography.

摘要

近年来,高通量大分子晶体学的需求推动了相位测定方法、数据收集协议及许多其他技术的不断改进。利用铬X射线辐射进行单波长反常散射(SAS)相位测定,为利用内部收集的数据对蛋白质进行相位测定开辟了新的可能性,并催生了几个仅使用硫等弱反常散射体从头解析结构的成功案例。为了进一步缩短数据收集时间并使SAS相位测定更稳健,将硒代甲硫氨酸衍生化蛋白(SeMet蛋白)与Cr Kα辐射相结合以利用来自硒(f'' = 2.28 e(-))比硫(f'' = 1.14 e(-))更大的反常散射信号是很自然的。如本文所报道,利用Cr Kα辐射的Se-SAS测定了来自嗜热栖热菌的一种假定分支酸变位酶的晶体结构。每个蛋白质分子在148个氨基酸残基中含有8个硒代甲硫氨酸残基,在Cr Kα波长下计算得到的Bijvoet比率约为3.5%。使用与Cr源耦合的成像板探测器收集了一个分辨率为2.2 Å、冗余度约为九倍的单一数据集。在获得标度后的衍射数据9小时内完成了结构解析、精修并提交至蛋白质数据库。这里使用的方法适用于许多其他蛋白质,并有望成为内部高通量晶体学的常规途径。

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