Xu Hao, Yang Cheng, Chen Lirong, Kataeva Irina A, Tempel Wolfram, Lee Doowon, Habel Jeff E, Nguyen Duong, Pflugrath James W, Ferrara Joseph D, Arendall W Bryan, Richardson Jane S, Richardson David C, Liu Zhi Jie, Newton M Gary, Rose John P, Wang Bi Cheng
Southeast Collaboratory for Structural Genomics, Department of Biochemistry and Molecular Biology, The University of Georgia, Athens, GA 30605, USA.
Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):960-6. doi: 10.1107/S0907444905010644. Epub 2005 Jun 24.
Recently, the demands of high-throughput macromolecular crystallography have driven continuous improvements in phasing methods, data-collection protocols and many other technologies. Single-wavelength anomalous scattering (SAS) phasing with chromium X-ray radiation opens a new possibility for phasing a protein with data collected in-house and has led to several successful examples of de novo structure solution using only weak anomalous scatterers such as sulfur. To further reduce data-collection time and make SAS phasing more robust, it is natural to combine selenomethionine-derivatized protein (SeMet protein) with Cr Kalpha radiation to take advantage of the larger anomalous scattering signal from selenium (f'' = 2.28 e(-)) compared with sulfur (f'' = 1.14 e(-)). As reported herein, the crystal structure of a putative chorismate mutase from Clostridium thermocellum was determined using Se-SAS with Cr Kalpha radiation. Each protein molecule contains eight selenomethionine residues in 148 amino-acid residues, providing a calculated Bijvoet ratio of about 3.5% at the Cr Kalpha wavelength. A single data set to 2.2 A resolution with approximately ninefold redundancy was collected using an imaging-plate detector coupled with a Cr source. Structure solution, refinement and deposition to the Protein Data Bank were performed within 9 h of the availability of the scaled diffraction data. The procedure used here is applicable to many other proteins and promises to become a routine pathway for in-house high-throughput crystallography.
近年来,高通量大分子晶体学的需求推动了相位测定方法、数据收集协议及许多其他技术的不断改进。利用铬X射线辐射进行单波长反常散射(SAS)相位测定,为利用内部收集的数据对蛋白质进行相位测定开辟了新的可能性,并催生了几个仅使用硫等弱反常散射体从头解析结构的成功案例。为了进一步缩短数据收集时间并使SAS相位测定更稳健,将硒代甲硫氨酸衍生化蛋白(SeMet蛋白)与Cr Kα辐射相结合以利用来自硒(f'' = 2.28 e(-))比硫(f'' = 1.14 e(-))更大的反常散射信号是很自然的。如本文所报道,利用Cr Kα辐射的Se-SAS测定了来自嗜热栖热菌的一种假定分支酸变位酶的晶体结构。每个蛋白质分子在148个氨基酸残基中含有8个硒代甲硫氨酸残基,在Cr Kα波长下计算得到的Bijvoet比率约为3.5%。使用与Cr源耦合的成像板探测器收集了一个分辨率为2.2 Å、冗余度约为九倍的单一数据集。在获得标度后的衍射数据9小时内完成了结构解析、精修并提交至蛋白质数据库。这里使用的方法适用于许多其他蛋白质,并有望成为内部高通量晶体学的常规途径。