Pallaghy P K, He W, Jimenez E C, Olivera B M, Norton R S
Biomolecular Research Institute, 343 Royal Parade, Parkville 3052, Australia.
Biochemistry. 2000 Oct 24;39(42):12845-52. doi: 10.1021/bi0010930.
The contryphan family of cyclic peptides, isolated recently from various species of cone shell, has the conserved sequence motif NH(3)(+)-X(1)COD-WX(5)PWC-NH(2), where X(1) is either Gly or absent, O is 4-trans-hydroxyproline, and X(5) is Glu, Asp, or Gln. The solution structures described herein of two new naturally occurring contryphan sequences, contryphan-Sm and des[Gly1]-contryphan-R, are similar to those of contryphan-R, the structure of which has been determined recently [Pallaghy et al. (1999) Biochemistry 38, 11553-11559]. The (1)H NMR chemical shifts of another naturally occurring peptide, contryphan-P, indicate that it also adopts a similar structure. All of these contryphans exist in solution as a mixture of two conformers due to cis-trans isomerization about the Cys2-Hyp3 peptide bond. The lower cis-trans ratio for contryphan-Sm enabled elucidation of the 3D structure of both its major and its minor forms, for which the patterns of (3)J(H)(alpha)(HN) coupling constants are very different. As with contryphan-R, the structure of the major form of contryphan-Sm (cis Cys2-Hyp3 peptide bond) contains an N-terminal chain reversal and a C-terminal type I beta-turn. The minor conformer (trans peptide bond) forms a hairpin structure with sheetlike hydrogen bonds and a type II beta-turn, with the D-Trp4 at the 'Gly position' of the turn. The ratio of conformers arising from cis-trans isomerism around the peptide bond preceding Hyp3 is sensitive to both the amino acid sequence and the solution conditions, varying from 2.7:1 to 17:1 across the five sequences. The sequence and structural determinants of the cis-trans isomerism have been elucidated by comparison of the cis-trans ratios for these peptides with those for contryphan-R and an N-acetylated derivative thereof. The cis-trans ratio is reduced for peptides in which either the charged N-terminal ammonium or the X(5) side-chain carboxylate is neutralized, implying that an electrostatic interaction between these groups stabilizes the cis conformer relative to the trans. These results on the structures and cis-trans equilibrium of different conformers suggest a paradigm of 'locally determined but globally selected' folding for cyclic peptides and constrained protein loops, where the series of stereochemical centers in the loop dictates the favorable conformations and the equilibrium is determined by a small number of side-chain interactions.
最近从各种芋螺中分离出的环肽类芋螺毒素家族,具有保守的序列基序NH(3)(+)-X(1)COD-WX(5)PWC-NH(2),其中X(1)为甘氨酸或不存在,O为4-反式羟基脯氨酸,X(5)为谷氨酸、天冬氨酸或谷氨酰胺。本文描述的两种新的天然存在的芋螺毒素序列芋螺毒素-Sm和去[甘氨酸1]-芋螺毒素-R的溶液结构,与芋螺毒素-R的结构相似,芋螺毒素-R的结构最近已被确定[帕拉吉等人(1999年)《生物化学》38卷,11553 - 11559页]。另一种天然存在的肽芋螺毒素-P的(1)H NMR化学位移表明它也采用类似的结构。由于半胱氨酸2 - 羟脯氨酸3肽键周围的顺反异构化,所有这些芋螺毒素在溶液中均以两种构象异构体的混合物形式存在。芋螺毒素-Sm的顺反比例较低,这使得能够阐明其主要和次要形式的三维结构,其(3)J(H)(α)(HN)偶合常数模式有很大不同。与芋螺毒素-R一样,芋螺毒素-Sm主要形式(半胱氨酸2 - 羟脯氨酸3肽键为顺式)的结构包含一个N端链反转和一个C端I型β-转角。次要构象异构体(反式肽键)形成具有片状氢键和II型β-转角的发夹结构,D-色氨酸4位于转角的“甘氨酸位置”。围绕羟脯氨酸3之前的肽键的顺反异构化产生的构象异构体比例对氨基酸序列和溶液条件都很敏感,在这五个序列中从2.7:1到17:1不等。通过比较这些肽与芋螺毒素-R及其N-乙酰化衍生物的顺反比例,阐明了顺反异构化的序列和结构决定因素。对于带电的N端铵基或X(5)侧链羧酸盐被中和的肽,顺反比例降低,这意味着这些基团之间的静电相互作用相对于反式构象稳定了顺式构象。关于不同构象异构体的结构和顺反平衡的这些结果,为环肽和受限蛋白环提出了一种“局部决定但全局选择”折叠的范例,其中环中的一系列立体化学中心决定了有利的构象,而平衡由少数侧链相互作用决定。