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Structural and mechanistic conservation in DNA ligases.DNA连接酶的结构与机制保守性
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2
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NAD(+)-dependent DNA ligase: a novel target waiting for the right inhibitor.烟酰胺腺嘌呤二核苷酸(NAD(+))依赖性DNA连接酶:一个等待合适抑制剂的新靶点。
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Structure of the adenylation domain of an NAD+-dependent DNA ligase.一种依赖烟酰胺腺嘌呤二核苷酸(NAD⁺)的DNA连接酶的腺苷化结构域的结构
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Bacterial DNA ligases.细菌DNA连接酶。
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DNA ligase III is recruited to DNA strand breaks by a zinc finger motif homologous to that of poly(ADP-ribose) polymerase. Identification of two functionally distinct DNA binding regions within DNA ligase III.DNA连接酶III通过一个与聚(ADP-核糖)聚合酶的锌指基序同源的锌指基序被招募到DNA链断裂处。鉴定DNA连接酶III内两个功能不同的DNA结合区域。
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本文引用的文献

1
Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications.NAD⁺依赖性DNA连接酶的晶体结构:模块化结构及其功能意义
EMBO J. 2000 Mar 1;19(5):1119-29. doi: 10.1093/emboj/19.5.1119.
2
Mutational analysis of Escherichia coli DNA ligase identifies amino acids required for nick-ligation in vitro and for in vivo complementation of the growth of yeast cells deleted for CDC9 and LIG4.大肠杆菌DNA连接酶的突变分析确定了体外切口连接以及体内对缺失CDC9和LIG4的酵母细胞生长进行互补所需的氨基酸。
Nucleic Acids Res. 1999 Oct 15;27(20):3953-63. doi: 10.1093/nar/27.20.3953.
3
Conversion of a DNA ligase into an RNA capping enzyme.将DNA连接酶转化为RNA封端酶。
Nucleic Acids Res. 1999 Aug 15;27(16):3253-8. doi: 10.1093/nar/27.16.3253.
4
The crystal structure of the complex of replication protein A subunits RPA32 and RPA14 reveals a mechanism for single-stranded DNA binding.复制蛋白A亚基RPA32和RPA14复合物的晶体结构揭示了单链DNA结合机制。
EMBO J. 1999 Aug 16;18(16):4498-504. doi: 10.1093/emboj/18.16.4498.
5
DNA ligase III is recruited to DNA strand breaks by a zinc finger motif homologous to that of poly(ADP-ribose) polymerase. Identification of two functionally distinct DNA binding regions within DNA ligase III.DNA连接酶III通过一个与聚(ADP-核糖)聚合酶的锌指基序同源的锌指基序被招募到DNA链断裂处。鉴定DNA连接酶III内两个功能不同的DNA结合区域。
J Biol Chem. 1999 Jul 30;274(31):21679-87. doi: 10.1074/jbc.274.31.21679.
6
Structure of the adenylation domain of an NAD+-dependent DNA ligase.一种依赖烟酰胺腺嘌呤二核苷酸(NAD⁺)的DNA连接酶的腺苷化结构域的结构
Structure. 1999 Jan 15;7(1):35-42. doi: 10.1016/s0969-2126(99)80007-0.
7
Footprinting of Chlorella virus DNA ligase bound at a nick in duplex DNA.小球藻病毒DNA连接酶结合在双链DNA切口处的足迹分析
J Biol Chem. 1999 May 14;274(20):14032-9. doi: 10.1074/jbc.274.20.14032.
8
Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches.通过迭代数据库搜索获取有关蛋白质的重要结构、功能和进化信息。
J Mol Biol. 1999 Apr 16;287(5):1023-40. doi: 10.1006/jmbi.1999.2653.
9
Functional domains of an NAD+-dependent DNA ligase.一种依赖烟酰胺腺嘌呤二核苷酸(NAD+)的DNA连接酶的功能结构域。
J Mol Biol. 1999 Jan 8;285(1):73-83. doi: 10.1006/jmbi.1998.2302.
10
Functional domains of an ATP-dependent DNA ligase.一种ATP依赖性DNA连接酶的功能结构域。
J Mol Biol. 1999 Jan 8;285(1):63-71. doi: 10.1006/jmbi.1998.2301.

DNA连接酶的结构与机制保守性

Structural and mechanistic conservation in DNA ligases.

作者信息

Doherty A J, Suh S W

机构信息

Structural Medicine Unit, Department of Haematology, Wellcome Trust Centre for Molecular Mechanisms in Disease, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 2XY, UK.

出版信息

Nucleic Acids Res. 2000 Nov 1;28(21):4051-8. doi: 10.1093/nar/28.21.4051.

DOI:10.1093/nar/28.21.4051
PMID:11058099
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC113121/
Abstract

DNA ligases are enzymes required for the repair, replication and recombination of DNA. DNA ligases catalyse the formation of phosphodiester bonds at single-strand breaks in double-stranded DNA. Despite their occurrence in all organisms, DNA ligases show a wide diversity of amino acid sequences, molecular sizes and properties. The enzymes fall into two groups based on their cofactor specificity, those requiring NAD(+) for activity and those requiring ATP. The eukaryotic, viral and archael bacteria encoded enzymes all require ATP. NAD(+)-requiring DNA ligases have only been found in prokaryotic organisms. Recently, the crystal structures of a number of DNA ligases have been reported. It is the purpose of this review to summarise the current knowledge of the structure and catalytic mechanism of DNA ligases.

摘要

DNA连接酶是DNA修复、复制和重组所必需的酶。DNA连接酶催化双链DNA单链断裂处磷酸二酯键的形成。尽管DNA连接酶存在于所有生物体中,但它们在氨基酸序列、分子大小和性质方面表现出广泛的多样性。根据其辅因子特异性,这些酶可分为两组,一组需要NAD(+)来发挥活性,另一组需要ATP。真核生物、病毒和古细菌编码的酶都需要ATP。需要NAD(+)的DNA连接酶仅在原核生物中发现。最近,已经报道了多种DNA连接酶的晶体结构。本综述的目的是总结目前关于DNA连接酶结构和催化机制的知识。