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反义寡脱氧核苷酸和核酶设计

Antisense oligodeoxynucleotide and ribozyme design.

作者信息

Probst J C

机构信息

Wilex Biotechnology GmbH, Grillparzerstrasse 10b, Munich, D-81675, Germany.

出版信息

Methods. 2000 Nov;22(3):271-81. doi: 10.1006/meth.2000.1079.

DOI:10.1006/meth.2000.1079
PMID:11071823
Abstract

The overwhelming advances of the last few years in the field of nucleic acid-based technologies laid the basis for the development of this new technology as a frontier method not only to combat diseases and infections but also to study gene function. The development of antisense strategies has generated considerable expectations in the neurosciences and, in particular, behavioral neurobiology. Antisense application in the brain has become a technology with tremendous impact, especially for determining the molecular pathways and substrates of behavior of an organism controlled by independent stimuli. The antisense agents, either oligodeoxynucleotides or ribozymes, interfere in the genetic flow of information from DNA via RNA to protein. According to the literature it seems clear that appropriately modified antisense compounds successfully and stably bind to their target ribonucleic acid molecules. This antisense binding leads to a decrease in the corresponding protein levels. If the targeted protein exerts detrimental effects on the cell or tissue, its reduction should be beneficial from a therapeutic point of view. If the investigator wants to study the function of a specific gene product the selective and transient downregulation of the corresponding target protein will help in functional analysis. In the following article I describe the chemical nature of the antisense oligodeoxynucleotides and some of the most commonly used derivatives and give some guidelines on antisense construction and application. The possible mode of action is discussed, as is expansion of the oligonucleotide-based application to ribozyme-mediated gene inhibition. Finally, problems that may be encountered during antisense application are discussed.

摘要

过去几年中,基于核酸的技术取得了巨大进展,为这项新技术的发展奠定了基础。它不仅是对抗疾病和感染的前沿方法,也是研究基因功能的前沿方法。反义策略的发展在神经科学领域,尤其是行为神经生物学领域,引发了人们相当大的期待。反义技术在大脑中的应用已成为一项具有巨大影响力的技术,特别是对于确定由独立刺激控制的生物体行为的分子途径和底物而言。反义剂,无论是寡脱氧核苷酸还是核酶,都会干扰从DNA经RNA到蛋白质的遗传信息流。根据文献,似乎很清楚的是,经过适当修饰的反义化合物能够成功且稳定地与其靶核糖核酸分子结合。这种反义结合会导致相应蛋白质水平的降低。如果靶向的蛋白质对细胞或组织产生有害影响,从治疗角度来看,其减少应该是有益的。如果研究人员想要研究特定基因产物的功能,相应靶蛋白的选择性和瞬时下调将有助于进行功能分析。在下面的文章中,我将描述反义寡脱氧核苷酸的化学性质以及一些最常用的衍生物,并给出一些关于反义构建和应用的指导方针。还将讨论可能的作用方式,以及基于寡核苷酸的应用扩展到核酶介导的基因抑制。最后,将讨论反义应用过程中可能遇到的问题。

相似文献

1
Antisense oligodeoxynucleotide and ribozyme design.反义寡脱氧核苷酸和核酶设计
Methods. 2000 Nov;22(3):271-81. doi: 10.1006/meth.2000.1079.
2
Detection of antisense and ribozyme accessible sites on native mRNAs: application to NCOA3 mRNA.天然mRNA上反义及核酶可及位点的检测:应用于NCOA3 mRNA
Mol Ther. 2001 Nov;4(5):454-60. doi: 10.1006/mthe.2001.0481.
3
Downregulation of bcl-2 expression in lymphoma cells by bcl-2 ARE-targeted modified, synthetic ribozyme.
Cancer Gene Ther. 2003 Mar;10(3):201-8. doi: 10.1038/sj.cgt.7700556.
4
Suppression of gene expression by targeted disruption of messenger RNA: available options and current strategies.通过靶向破坏信使核糖核酸抑制基因表达:可用选项及当前策略
Stem Cells. 2000;18(5):307-19. doi: 10.1634/stemcells.18-5-307.
5
Influence of mRNA self-structure on hybridization: computational tools for antisense sequence selection.信使核糖核酸自身结构对杂交的影响:反义序列选择的计算工具
Methods. 2000 Nov;22(3):261-9. doi: 10.1006/meth.2000.1078.
6
[Basic principles of the antisense strategy].[反义策略的基本原理]
Rev Med Chir Soc Med Nat Iasi. 2003 Jul-Sep;107(3):483-6.
7
Selection of antisense oligodeoxynucleotides against glutathione S-transferase Mu.针对谷胱甘肽S-转移酶Mu的反义寡脱氧核苷酸的筛选
RNA. 2002 Dec;8(12):1572-83.
8
Generation and application of asymmetric hammerhead ribozymes.不对称锤头状核酶的产生与应用。
Methods. 1999 Jul;18(3):273-80. doi: 10.1006/meth.1999.0784.
9
Design and expression of chimeric U1/ribozyme transgenes.嵌合U1/核酶转基因的设计与表达
Methods Mol Biol. 2004;252:209-19. doi: 10.1385/1-59259-746-7:209.
10
Oxetane modified, conformationally constrained, antisense oligodeoxyribonucleotides function efficiently as gene silencing molecules.氧杂环丁烷修饰的、构象受限的反义寡脱氧核糖核苷酸作为基因沉默分子发挥高效作用。
Nucleic Acids Res. 2004 Oct 28;32(19):5791-9. doi: 10.1093/nar/gkh893. Print 2004.

引用本文的文献

1
Catalytic nucleic acid enzymes for the study and development of therapies in the central nervous system: Review Article.用于中枢神经系统治疗研究与开发的催化核酸酶:综述文章
Gene Ther Mol Biol. 2005;9A:89-106.
2
Bcl2-low-expressing MCF7 cells undergo necrosis rather than apoptosis upon staurosporine treatment.低表达Bcl2的MCF7细胞在星形孢菌素处理后发生坏死而非凋亡。
Biochem J. 2004 May 1;379(Pt 3):823-32. doi: 10.1042/BJ20031538.
3
Fast and accurate determination of sites along the FUT2 in vitro transcript that are accessible to antisense oligonucleotides by application of secondary structure predictions and RNase H in combination with MALDI-TOF mass spectrometry.
通过应用二级结构预测、核糖核酸酶H并结合基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS),快速准确地确定体外转录本中FUT2上可被反义寡核苷酸识别的位点。
Nucleic Acids Res. 2003 Aug 1;31(15):e79. doi: 10.1093/nar/gng079.
4
Inhibiting expression of specific genes in mammalian cells with 5' end-mutated U1 small nuclear RNAs targeted to terminal exons of pre-mRNA.利用靶向前体mRNA末端外显子的5'端突变U1小核RNA抑制哺乳动物细胞中特定基因的表达。
Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8264-9. doi: 10.1073/pnas.1332669100. Epub 2003 Jun 25.