Terada T, Shirouzu M, Fukumori Y, Fujimori F, Ito Y, Kigawa T, Yokoyama S, Uchida T
Genomic Sciences Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan.
J Mol Biol. 2001 Jan 26;305(4):917-26. doi: 10.1006/jmbi.2000.4293.
The hPar14 protein is a peptidyl prolyl cis/trans isomerase and is a human parvulin homologue. The hPar14 protein shows about 30 % sequence identity with the other human parvulin homologue, hPin1. Here, the solution structure of hPar14 was determined by nuclear magnetic resonance spectroscopy. The N-terminal 35 residues preceding the peptidyl prolyl isomerase domain of hPar14 are unstructured, whereas hPin1 possesses the WW domain at its N terminus. The fold of residues 36-131 of hPar14, which comprises a four-stranded beta-sheet and three alpha-helices, is superimposable onto that of the peptidyl prolyl isomerase domain of hPin1. To investigate the interaction of hPar14 with a substrate, the backbone chemical-shift changes of hPar14 were monitored during titration with a tetra peptide. Met90, Val91, and Phe94 around the N terminus of alpha3 showed large chemical-shift changes. These residues form a hydrophobic patch on the molecular surface of hPar14. Two of these residues are conserved and have been shown to interact with the proline residue of the substrate in hPin1. On the other hand, hPar14 lacks the hPin1 positively charged residues (Lys63, Arg68, and Arg69), which determine the substrate specificity of hPin1 by interacting with phosphorylated Ser or Thr preceding the substrate Pro, and exhibits a different structure in the corresponding region. Therefore, the mechanism determining the substrate specificity seems to be different between hPar14 and hPin1.
hPar14蛋白是一种肽基脯氨酰顺/反异构酶,是人类小Parvulin同源物。hPar14蛋白与另一种人类小Parvulin同源物hPin1的序列同一性约为30%。在此,通过核磁共振光谱法确定了hPar14的溶液结构。hPar14肽基脯氨酰异构酶结构域之前的N端35个残基是无结构的,而hPin1在其N端具有WW结构域。hPar14中36 - 131位残基的折叠结构,包括一个四链β折叠和三个α螺旋,可与hPin1的肽基脯氨酰异构酶结构域的折叠结构叠加。为了研究hPar14与底物的相互作用,在用四肽滴定过程中监测了hPar14的主链化学位移变化。α3 N端周围的Met90、Val91和Phe94显示出较大的化学位移变化。这些残基在hPar14的分子表面形成一个疏水区域。其中两个残基是保守的,并且已被证明与hPin1中底物的脯氨酸残基相互作用。另一方面,hPar14缺乏hPin1的带正电荷残基(Lys63、Arg68和Arg69),这些残基通过与底物Pro之前的磷酸化Ser或Thr相互作用来确定hPin1的底物特异性,并且在相应区域表现出不同的结构。因此,hPar14和hPin1之间决定底物特异性的机制似乎不同。