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拟南芥基因组序列作为番茄功能基因组学的一种工具。

Arabidopsis genome sequence as a tool for functional genomics in tomato.

作者信息

Mysore K S, Tuori R P, Martin G B

机构信息

Boyce Thompson Institute for Plant Research, Cornell University, Tower Road, Ithaca, NY 14853, USA.

出版信息

Genome Biol. 2001;2(1):REVIEWS1003. doi: 10.1186/gb-2001-2-1-reviews1003. Epub 2001 Jan 12.

DOI:10.1186/gb-2001-2-1-reviews1003
PMID:11178283
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC150440/
Abstract

Tomato is a well-established model organism for studying many biological processes including resistance and susceptibility to pathogens and the development and ripening of fleshy fruits. The availability of the complete Arabidopsis genome sequence will expedite map-based cloning in tomato on the basis of chromosomal synteny between the two species, and will facilitate the functional analysis of tomato genes.

摘要

番茄是一种成熟的模式生物，可用于研究许多生物学过程，包括对病原体的抗性和易感性以及肉质果实的发育和成熟。拟南芥完整基因组序列的可得性将基于这两个物种之间的染色体同线性加速番茄中基于图谱的克隆，并将促进番茄基因的功能分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d6e/150440/a8609f00fb0a/gb-2001-2-1-reviews1003-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d6e/150440/a8609f00fb0a/gb-2001-2-1-reviews1003-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d6e/150440/a8609f00fb0a/gb-2001-2-1-reviews1003-1.jpg

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Genome Biol. 2001;2(1):REVIEWS1003. doi: 10.1186/gb-2001-2-1-reviews1003. Epub 2001 Jan 12.
2
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引用本文的文献

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PLoS One. 2017 Nov 2;12(11):e0187504. doi: 10.1371/journal.pone.0187504. eCollection 2017.
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Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato.番茄发育和非生物胁迫处理过程中 ERF 家族基因的鉴定、系统发育和转录谱分析。
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3

本文引用的文献

1
Organization of an Arabidopsis thaliana gene cluster on chromosome 4 including the RPS2 gene, in the Brassica nigra genome.拟南芥基因簇在黑芥基因组第 4 条染色体上的组织，包括 RPS2 基因。
Theor Appl Genet. 1998 Mar;96(3-4):468-74. doi: 10.1007/s001220050763.
2
A polypeptide from tomato leaves induces wound-inducible proteinase inhibitor proteins.番茄叶片中的一种多肽诱导伤诱导型蛋白酶抑制剂蛋白。
Science. 1991 Aug 23;253(5022):895-7. doi: 10.1126/science.253.5022.895.
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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
Arabidopsis and the plant immune system.
拟南芥与植物免疫系统。
Plant J. 2010 Mar;61(6):1053-66. doi: 10.1111/j.1365-313X.2010.04131.x.
4
Fine mapping in tomato using microsynteny with the Arabidopsis genome: the Diageotropica (Dgt) locus.利用与拟南芥基因组的微同源性在番茄中进行精细定位：斜生（Dgt）基因座。
Genome Biol. 2002 Aug 28;3(9):research0049. doi: 10.1186/gb-2002-3-9-research0049.
5
Comparative genomics of Arabidopsis and maize: prospects and limitations.拟南芥和玉米的比较基因组学：前景与局限
Genome Biol. 2002;3(3):REVIEWS1005. doi: 10.1186/gb-2002-3-3-reviews1005. Epub 2002 Feb 14.
开花植物拟南芥的基因组序列分析。
Nature. 2000 Dec 14;408(6814):796-815. doi: 10.1038/35048692.
4
Signal recognition and transduction mediated by the tomato Pto kinase: a paradigm of innate immunity in plants.番茄Pto激酶介导的信号识别与转导：植物先天免疫的一个范例
Microbes Infect. 2000 Nov;2(13):1591-7. doi: 10.1016/s1286-4579(00)01315-0.
5
Total silencing by intron-spliced hairpin RNAs.内含子剪接发夹RNA介导的完全沉默
Nature. 2000 Sep 21;407(6802):319-20. doi: 10.1038/35030305.
6
Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella.比较基因组分析揭示了拟南芥和琴叶拟南芥基因组组织的广泛保守性。
Plant J. 2000 Jul;23(1):55-62. doi: 10.1046/j.1365-313x.2000.00790.x.
7
Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny.比较番茄和拟南芥基因组的测序片段：大规模复制后伴随选择性基因丢失形成了一个同线性网络。
Proc Natl Acad Sci U S A. 2000 Aug 1;97(16):9121-6. doi: 10.1073/pnas.160271297.
8
fw2.2: a quantitative trait locus key to the evolution of tomato fruit size.fw2.2：番茄果实大小进化的关键数量性状基因座
Science. 2000 Jul 7;289(5476):85-8. doi: 10.1126/science.289.5476.85.
9
Comparative genetics of disease resistance within the solanaceae.茄科植物抗病性的比较遗传学
Genetics. 2000 Jun;155(2):873-87. doi: 10.1093/genetics/155.2.873.
10
Pti4 is induced by ethylene and salicylic acid, and its product is phosphorylated by the Pto kinase.Pti4由乙烯和水杨酸诱导产生，其产物被Pto激酶磷酸化。
Plant Cell. 2000 May;12(5):771-86. doi: 10.1105/tpc.12.5.771.