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本文引用的文献

1
Unfolding pathways of individual bacteriorhodopsins.单个细菌视紫红质的解折叠途径
Science. 2000 Apr 7;288(5463):143-6. doi: 10.1126/science.288.5463.143.
2
Mechanical unfolding intermediates in titin modules.肌联蛋白模块中的机械展开中间体。
Nature. 1999 Nov 4;402(6757):100-3. doi: 10.1038/47083.
3
Forced unfolding of fibronectin type 3 modules: an analysis by biased molecular dynamics simulations.纤连蛋白3型结构域的强制展开:基于有偏分子动力学模拟的分析
J Mol Biol. 1999 May 7;288(3):441-59. doi: 10.1006/jmbi.1999.2670.
4
Optimized Monte Carlo data analysis.优化的蒙特卡罗数据分析。
Phys Rev Lett. 1989 Sep 18;63(12):1195-1198. doi: 10.1103/PhysRevLett.63.1195.
5
Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy.利用动态力谱探索受体-配体键的能量景观。
Nature. 1999 Jan 7;397(6714):50-3. doi: 10.1038/16219.
6
The molecular elasticity of the extracellular matrix protein tenascin.细胞外基质蛋白腱生蛋白的分子弹性
Nature. 1998 May 14;393(6681):181-5. doi: 10.1038/30270.
7
Binding pathway of retinal to bacterio-opsin: a prediction by molecular dynamics simulations.视黄醛与细菌视紫红质的结合途径:分子动力学模拟预测
Biophys J. 1997 Dec;73(6):2972-9. doi: 10.1016/S0006-3495(97)78326-7.
8
Reconstructing potential energy functions from simulated force-induced unbinding processes.从模拟的力诱导解链过程中重建势能函数。
Biophys J. 1997 Sep;73(3):1281-7. doi: 10.1016/S0006-3495(97)78161-X.
9
Elasticity and unfolding of single molecules of the giant muscle protein titin.巨大肌肉蛋白肌联蛋白单分子的弹性与解折叠
Nature. 1997 May 15;387(6630):308-12. doi: 10.1038/387308a0.
10
Folding-unfolding transitions in single titin molecules characterized with laser tweezers.用激光镊子表征单个肌联蛋白分子中的折叠-去折叠转变。
Science. 1997 May 16;276(5315):1112-6. doi: 10.1126/science.276.5315.1112.

从非平衡单分子拉伸实验中重建自由能

Free energy reconstruction from nonequilibrium single-molecule pulling experiments.

作者信息

Hummer G, Szabo A

机构信息

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520, USA.

出版信息

Proc Natl Acad Sci U S A. 2001 Mar 27;98(7):3658-61. doi: 10.1073/pnas.071034098.

DOI:10.1073/pnas.071034098
PMID:11274384
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC31107/
Abstract

Laser tweezers and atomic force microscopes are increasingly used to probe the interactions and mechanical properties of individual molecules. Unfortunately, using such time-dependent perturbations to force rare molecular events also drives the system away from equilibrium. Nevertheless, we show how equilibrium free energy profiles can be extracted rigorously from repeated nonequilibrium force measurements on the basis of an extension of Jarzynski's remarkable identity between free energies and the irreversible work.

摘要

激光镊子和原子力显微镜越来越多地用于探测单个分子的相互作用和力学性质。不幸的是,使用这种随时间变化的微扰来迫使罕见的分子事件发生,也会使系统偏离平衡态。尽管如此,我们展示了如何基于雅尔津斯基关于自由能与不可逆功之间的卓越恒等式的扩展,从重复的非平衡力测量中严格提取平衡自由能分布。