Krowarsch D, Otlewski J
Laboratory of Protein Engineering, Institute of Biochemistry and Molecular Biology, University of Wroclaw, 50-137 Wroclaw, Poland.
Protein Sci. 2001 Apr;10(4):715-24. doi: 10.1110/ps.38101.
It is widely accepted that solvent-exposed sites in proteins play only a negligible role in determining protein energetics. In this paper we show that amino acid substitutions at the fully exposed Lys15 in bovine pancreatic trypsin inhibitor (BPTI) influenced the CD- and DSC-monitored stability: The T(den) difference between the least (P1 Trp) and the most stable (P1 His) mutant is 11.2 degrees C at pH 2.0. The DeltaH(den) versus T(den) plot for all the variants at three pH values (2.0, 2.5, 3.0) is linear (DeltaC(p,den) = 0.41 kcal* mole(-1) * K(-1); 1 cal = 4.18 J) leading to a DeltaG(den) difference of 2.1 kcal*mole(-1). Thermal denaturation of the variants monitored by CD signal at pH 2.0 in the presence of 6 M GdmCl again showed differences in their stability, albeit somewhat smaller (DeltaT(den) =7.1 degrees C). Selective reduction of the Cys14-Cys 38 disulfide bond, which is located in the vicinity of the P1 position did not eliminate the stability differences. A correlation analysis of the P1 stability with different properties of amino acids suggests that two mechanisms may be responsible for the observed stability differences: the reverse hydrophobic effect and amino acid propensities to occur in nonoptimal dihedral angles adopted by the P1 position. The former effect operates at the denatured state level and causes a drop in protein stability for hydrophobic side chains, due to their decreased exposure upon denaturation. The latter factor influences the native state energetics and results from intrinsic properties of amino acids in a way similar to those observed for secondary structure propensities. In conclusion, our results suggest that the protein-stability-derived secondary structure propensity scales should be taken with more caution.
人们普遍认为,蛋白质中暴露于溶剂的位点在决定蛋白质能量方面仅起微不足道的作用。在本文中,我们表明,牛胰蛋白酶抑制剂(BPTI)中完全暴露的赖氨酸15处的氨基酸取代影响了圆二色光谱(CD)和差示扫描量热法(DSC)监测的稳定性:在pH 2.0时,最不稳定(P1位为色氨酸)和最稳定(P1位为组氨酸)突变体之间的变性温度(T(den))差异为11.2℃。在三个pH值(2.0、2.5、3.0)下,所有变体的变性焓(DeltaH(den))与变性温度(T(den))的关系图呈线性(变性热容DeltaC(p,den)=0.41千卡·摩尔-1·K-1;1卡=4.18焦耳),导致变性自由能(DeltaG(den))差异为2.1千卡·摩尔-1。在6 M盐酸胍存在下,于pH 2.0通过CD信号监测变体的热变性,再次显示出它们在稳定性上的差异,尽管差异稍小(DeltaT(den)=7.1℃)。位于P1位置附近的半胱氨酸14-半胱氨酸38二硫键的选择性还原并没有消除稳定性差异。对P1稳定性与氨基酸不同性质的相关性分析表明,两种机制可能导致了观察到的稳定性差异:反向疏水效应和氨基酸倾向于出现在P1位置所采用的非最佳二面角中。前一种效应在变性状态水平起作用,由于疏水侧链在变性时暴露减少,导致蛋白质稳定性下降。后一个因素影响天然状态的能量,是由氨基酸的内在性质引起的,其方式类似于二级结构倾向所观察到的情况。总之,我们的结果表明,应更加谨慎地看待源自蛋白质稳定性的二级结构倾向标度。