Svergun D I, Zaccai G, Malfois M, Wade R H, Koch M H, Kozielski F
Institute of Crystallography, Russian Academy of Sciences, Leninsky Prospekt 59, 117333 Russia.
J Biol Chem. 2001 Jul 6;276(27):24826-32. doi: 10.1074/jbc.M103618200. Epub 2001 May 2.
The quaternary structures of monomeric and dimeric Drosophila non-claret disjunctional (ncd) constructs were investigated using synchrotron x-ray and neutron solution scattering, and their low resolution shapes were restored ab initio from the scattering data. The experimental curves were further compared with those computed from crystallographic models of one monomeric and three available dimeric ncd structures in the microtubule-independent ADP-bound state. These comparisons indicate that accounting for the missing parts in the crystal structures for all these constructs is indispensable to obtain reasonable fits to the scattering patterns. A ncd construct (MC6) lacking the coiled-coil region is monomeric in solution, but the calculated scattering from the crystallographic monomer yields a poor fit to the data. A tentative configuration of the missing C-terminal residues in the form of an antiparallel beta-sheet was found that significantly improves the fit. The atomic model of a short dimeric ncd construct (MC5) without 2-fold symmetry is found to fit the data better than the symmetric models. Addition of the C-terminal residues to both head domains gives an excellent fit to the x-ray and neutron experimental data, although the orientation of the beta-sheet differs from that of the monomer. The solution structure of the long ncd construct (MC1) including complete N-terminal coiled-coil and motor domains is modeled by adding a straight coiled-coil section to the model of MC5.
利用同步加速器X射线和中子溶液散射研究了单体和二聚体果蝇非清晰分离(ncd)构建体的四级结构,并从散射数据从头恢复了它们的低分辨率形状。将实验曲线与在不依赖微管的ADP结合状态下由一个单体和三个可用二聚体ncd结构的晶体学模型计算得到的曲线进行了进一步比较。这些比较表明,考虑所有这些构建体晶体结构中缺失的部分对于获得与散射图案的合理拟合是必不可少的。缺乏卷曲螺旋区域的ncd构建体(MC6)在溶液中是单体,但从晶体学单体计算得到的散射与数据拟合不佳。发现了以反平行β-折叠形式存在的缺失C末端残基的暂定构型,这显著改善了拟合效果。发现没有二重对称性的短二聚体ncd构建体(MC5)的原子模型比对称模型更能拟合数据。在两个头部结构域都添加C末端残基后,与X射线和中子实验数据拟合得非常好,尽管β-折叠的取向与单体不同。通过在MC5模型中添加一个直的卷曲螺旋部分,对包括完整N末端卷曲螺旋和马达结构域的长ncd构建体(MC1)的溶液结构进行了建模。