Dean M, Rzhetsky A, Allikmets R
Human Genetics Section, Laboratory of Genomic Diversity, National Cancer Institute-Frederick, Frederick, Maryland 21702, USA.
Genome Res. 2001 Jul;11(7):1156-66. doi: 10.1101/gr.184901.
The ATP-binding cassette (ABC) transporter superfamily contains membrane proteins that translocate a variety of substrates across extra- and intra-cellular membranes. Genetic variation in these genes is the cause of or contributor to a wide variety of human disorders with Mendelian and complex inheritance, including cystic fibrosis, neurological disease, retinal degeneration, cholesterol and bile transport defects, anemia, and drug response. Conservation of the ATP-binding domains of these genes has allowed the identification of new members of the superfamily based on nucleotide and protein sequence homology. Phylogenetic analysis is used to divide all 48 known ABC transporters into seven distinct subfamilies of proteins. For each gene, the precise map location on human chromosomes, expression data, and localization within the superfamily has been determined. These data allow predictions to be made as to potential functions or disease phenotypes associated with each protein. In this paper, we review the current state of knowledge on all human ABC genes in inherited disease and drug resistance. In addition, the availability of the complete Drosophila genome sequence allows the comparison of the known human ABC genes with those in the fly genome. The combined data enable an evolutionary analysis of the superfamily. Complete characterization of all ABC from the human genome and from model organisms will lead to important insights into the physiology and the molecular basis of many human disorders.
ATP结合盒(ABC)转运蛋白超家族包含能将多种底物转运穿过细胞外膜和内膜的膜蛋白。这些基因的遗传变异是导致多种具有孟德尔遗传和复杂遗传特征的人类疾病的原因或促成因素,包括囊性纤维化、神经疾病、视网膜变性、胆固醇和胆汁转运缺陷、贫血以及药物反应。这些基因ATP结合域的保守性使得基于核苷酸和蛋白质序列同源性鉴定出了该超家族的新成员。系统发育分析用于将所有48种已知的ABC转运蛋白分为七个不同的蛋白质亚家族。对于每个基因,已经确定了其在人类染色体上的精确图谱位置、表达数据以及在超家族中的定位。这些数据使得能够对与每种蛋白质相关的潜在功能或疾病表型进行预测。在本文中,我们综述了关于所有人类ABC基因在遗传性疾病和耐药性方面的当前知识状态。此外,完整的果蝇基因组序列的可得性使得能够将已知的人类ABC基因与果蝇基因组中的基因进行比较。综合这些数据能够对该超家族进行进化分析。对来自人类基因组和模式生物的所有ABC进行全面表征将有助于深入了解许多人类疾病的生理学和分子基础。