Makarenkov V
Département de Sciences Biologiques, Universitéde Montréal, CP 6128, succ. Centre-ville, Montréal, Québec H3C 3J7, Canada.
Bioinformatics. 2001 Jul;17(7):664-8. doi: 10.1093/bioinformatics/17.7.664.
T-REX (tree and reticulogram reconstruction) is an application to reconstruct phylogenetic trees and reticulation networks from distance matrices. The application includes a number of tree fitting methods like NJ, UNJ or ADDTREE which have been very popular in phylogenetic analysis. At the same time, the software comprises several new methods of phylogenetic analysis such as: tree reconstruction using weights, tree inference from incomplete distance matrices or modeling a reticulation network for a collection of objects or species. T-REX also allows the user to visualize obtained tree or network structures using Hierarchical, Radial or Axial types of tree drawing and manipulate them interactively.
T-REX is a freeware package available online at: http://www.fas.umontreal.ca/biol/casgrain/en/labo/t-rex
T-REX（树形图和网状图重建）是一款用于从距离矩阵重建系统发育树和网状网络的应用程序。该应用程序包括许多在系统发育分析中非常流行的树形拟合方法，如NJ、UNJ或ADDTREE。同时，该软件还包含几种新的系统发育分析方法，例如：使用权重进行树重建、从不完整距离矩阵进行树推断，或为一组对象或物种构建网状网络模型。T-REX还允许用户使用层次型、径向型或轴向型树形图可视化获得的树或网络结构，并对其进行交互式操作。
T-REX是一个免费软件包，可在以下网址在线获取：http://www.fas.umontreal.ca/biol/casgrain/en/labo/t-rex
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