Stein R B, Blum J J
J Biol Chem. 1979 Oct 25;254(20):10385-95.
Tetrahymena pyriformis were grown to early-stationary phase and resuspended in a defined mixture containing glucose, fructose, ribose, glycerol, acetate, pyruvate, bicarbonate, glutamate, and hexanoate, with only one substrate labeled with 14C in any flask. Incorporation of label into CO2, glycogen, RNA, alanine, glutamate, glycine, lipid glycerol, and lipid fatty acids was measured 20, 40, and 60 min after the start of the incubation. To develop a model suitable for quantitative analysis of the data, it was necessary to join two preceding models, one for carbohydrate-metabolizing cells and one for acetate-metabolizing cells, eliminating the over-simplified sections of each. Equations were written and programmed for a digital computer to allow computation of the amount of label expected to be incorporated into any of the products measured for any given set of steady state flux values in the metabolic network. The model formed by simply joining the two preceding models did not yield satisfactory agreement with the complete data obtained in the present study, although each partial set of data could be fit well by the appropriate partial model. Analysis of the ways in which the model failed to yield good fits to the data indicated that another pool of P-enolpyruvate, of pyruvate, and of acetyl-CoA had to be added at the junction of the two models. The presence of such poolte into fatty acids as compared to the incorporation of label from glucose into fatty acids. A new model was therefore constructed which differed from the preceding model only in its structural organization at the level of P-enolpyruvate, pyruvate, and acetyl-CoA. The model is consistent with all known information on the compartmental structure of metabolism in Tetrahymena, on enzyme localization, and on the enzyme complement of this cell. Over 70 measurements of label incorporation into products were made at each time. These, plus a large number of "limit" measurements which constrain any possible solutions, were in sufficient excess of the 39 independent flux values to permit a stringent assessment of the model. A set of flux values was found which yielded a good fit to the data. These flux values therefore provide a quantitative description of metabolite flux in the intact cell during the slow adaptation to the nine-substrate mixture. The rates of utilization of glucose, fructose, glycerol, and ribose were in the ratio of about 10:1:0.33:0.16, i.e. fairly similar to the ratio observed with carbohydrate-metabolizing cells. Initial flux through phosphofructokinase is about 160 nmol/10(6) cells.h, increasing over 3-fold during tje jpir incubation. Initial flux through fructose-1,6-diphosphatase is about 110 nmol/10(6) cells.h and also increases almost 3-fold during the incubation. Thus net flux is glycolytic and increases 4-fold during the hour with a large amount of futile cycling at this step...
将梨形四膜虫培养至早稳定期,然后重悬于含有葡萄糖、果糖、核糖、甘油、乙酸盐、丙酮酸盐、碳酸氢盐、谷氨酸盐和己酸盐的特定混合物中,每个培养瓶中仅有一种底物用(^{14}C)标记。在孵育开始后(20)、(40)和(60)分钟测量标记物掺入二氧化碳、糖原、RNA、丙氨酸、谷氨酸、甘氨酸、脂质甘油和脂质脂肪酸的情况。为了建立一个适合对数据进行定量分析的模型,有必要将之前的两个模型结合起来,一个是针对碳水化合物代谢细胞的模型,另一个是针对乙酸盐代谢细胞的模型,去除每个模型中过于简化的部分。编写了方程并为数字计算机编程,以便计算在代谢网络中任何给定的一组稳态通量值下,预期掺入任何测量产物中的标记物量。通过简单地结合之前的两个模型形成的模型,与本研究中获得的完整数据并不完全吻合,尽管每组部分数据都可以被相应的部分模型很好地拟合。对模型未能很好拟合数据的方式进行分析表明,必须在两个模型的交界处添加另一组磷酸烯醇丙酮酸、丙酮酸和乙酰辅酶A。与从葡萄糖掺入脂肪酸中的标记物相比,这种库的存在影响了脂肪酸中的标记物掺入。因此构建了一个新模型,它与之前的模型仅在磷酸烯醇丙酮酸、丙酮酸和乙酰辅酶A水平的结构组织上有所不同。该模型与关于四膜虫代谢的区室结构、酶定位以及该细胞的酶组成的所有已知信息一致。每次在每个时间点进行了超过(70)次标记物掺入产物的测量。这些测量,加上大量限制任何可能解的“极限”测量,远远超过了(39)个独立的通量值,从而能够对模型进行严格评估。找到了一组与数据拟合良好的通量值。因此,这些通量值提供了完整细胞在缓慢适应九底物混合物过程中代谢物通量的定量描述。葡萄糖、果糖、甘油和核糖的利用速率之比约为(10:1:0.33:0.16),即与碳水化合物代谢细胞中观察到的比率相当相似。通过磷酸果糖激酶的初始通量约为(160)nmol/(10^6)个细胞·小时,在孵育期间增加了超过(3)倍。通过果糖 - 1,6 - 二磷酸酶的初始通量约为(110)nmol/(10^6)个细胞·小时,在孵育期间也几乎增加了(3)倍。因此净通量是糖酵解性的并且在一小时内增加了(4)倍,在此步骤有大量无效循环……