Massi F, Straub J E
Department of Chemistry, Boston University, Boston, Massachusetts 02215, USA.
Biophys J. 2001 Aug;81(2):697-709. doi: 10.1016/S0006-3495(01)75734-7.
The amyloid peptide congener A beta(10--35)-NH(2) is simulated in an aqueous environment in both the wild type (WT) and E22Q "Dutch" mutant forms. The origin of the noted increase in deposition activity resulting from the Dutch mutation is investigated. Multiple nanosecond time scale molecular dynamics trajectories were performed and analyzed using a variety of measures of the peptide's average structure, hydration, conformational fluctuations, and dynamics. The results of the study support the conclusions that 1) the E22Q mutant and WT peptide are both stable in "collapsed coil" conformations consistent with the WT structure of, J. Struct. Biol. 130:130--141); 2) the E22Q peptide is more flexible in solution, supporting early claims that its equilibrium structural fluctuations are larger than those of the WT peptide; and 3) the local E22Q mutation leads to a change in the first solvation layer in the region of the peptide's "hydrophobic patch," resulting in a more hydrophobic solvation of the mutant peptide. The simulation results support the view that the noted increase in activity due to the Dutch mutation results from an enhancement of the desolvation process that is an essential step in the aggregation of the peptide.
在水性环境中对淀粉样肽同系物Aβ(10 - 35)-NH₂的野生型(WT)和E22Q“荷兰型”突变体形式进行了模拟。研究了由荷兰型突变导致的沉积活性显著增加的原因。使用多种肽平均结构、水合作用、构象波动和动力学的测量方法,进行并分析了多个纳秒时间尺度的分子动力学轨迹。研究结果支持以下结论:1)E22Q突变体和WT肽在与WT结构一致的“塌陷螺旋”构象中均稳定(J. Struct. Biol. 130:130 - 141);2)E22Q肽在溶液中更具柔性,支持了其早期的说法,即其平衡结构波动大于WT肽;3)局部E22Q突变导致肽“疏水补丁”区域的第一溶剂化层发生变化,导致突变肽的溶剂化更疏水。模拟结果支持以下观点,即荷兰型突变导致的活性增加是由于去溶剂化过程的增强,而去溶剂化过程是肽聚集的关键步骤。