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人胰岛素T(3)R(3)(f)中的相变:由温度还是压力引起?

Phase changes in T(3)R(3)(f) human insulin: temperature or pressure induced?

作者信息

Smith G D, Pangborn W A, Blessing R H

机构信息

Hauptman-Woodward Medical Research Institute, 73 High Street, Buffalo, NY 14203, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2001 Aug;57(Pt 8):1091-100. doi: 10.1107/s0907444901007685. Epub 2001 Jul 23.

Abstract

The structure of T(3)R(3) hexameric human insulin has been determined at 100 K from two different crystals at 1.2 and 1.3 A resolution and refined to residuals of 0.169 and 0.176, respectively. Owing to a phase change, the c axis is double its room-temperature value and the asymmetric unit contains two independent TR(f) insulin dimers. Compared with the orientation in the room-temperature structure, one dimer undergoes a rotation about the c axis of -5 degrees, while the second is rotated +4 degrees. A superposition of the backbone atoms of the two independent dimers shows that the C(alpha) atoms of five residues within the R(f)-state monomers are displaced by more than 1.0 A; smaller displacements are observed for the T-state monomers. Four zinc ions lie on the crystallographic threefold axis and each forms bonds to three symmetry-related HisB10 N(varepsilon2) atoms from the T- and R(f)-state trimers. While three of the zinc ions are tetrahedrally coordinated with a chloride ion completing the coordination sphere, mixed tetrahedral/octahedral coordination is observed for one of the T-state zinc ions. The three symmetry-related "phenolic binding sites" in one hexamer contain water molecules and a glycerol molecule, but the same sites in the second hexamer are occupied by a zinc ion coordinated to an alternate conformation of HisB10, a symmetry-related HisB5 and two chloride ions. Two additional and partially occupied zinc ion sites are observed at the interface between the two independent dimers. One zinc ion is coordinated by a T-state HisB5 of one dimer, an R-state HisB5 of the second dimer and two water molecules; the second zinc ion is coordinated by an alternate side-chain conformation of the T-state HisB5 and three water molecules. The carboxyl group of one GluB13 side chain, which exists in two discrete conformations, appears to be protonated, because short contacts exist to a second carboxyl group or to a carbonyl O atom.

摘要

已在100 K下从两种不同晶体中以1.2 Å和1.3 Å分辨率测定了T(3)R(3)六聚体人胰岛素的结构,并分别精修至残余因子为0.169和0.176。由于相变,c轴是其室温值的两倍,不对称单元包含两个独立的TR(f)胰岛素二聚体。与室温结构中的取向相比,一个二聚体绕c轴旋转了-5度,而另一个旋转了+4度。两个独立二聚体的主链原子叠加显示,R(f)态单体中五个残基的C(α)原子位移超过1.0 Å;T态单体的位移较小。四个锌离子位于晶体学三重轴上,每个锌离子与来自T态和R(f)态三聚体的三个对称相关的HisB10 N(ε2)原子形成键。虽然其中三个锌离子与一个氯离子形成四面体配位以完成配位球,但观察到一个T态锌离子为混合四面体/八面体配位。一个六聚体中的三个对称相关“酚结合位点”包含水分子和一个甘油分子,但第二个六聚体中的相同位点被一个与HisB10的另一种构象、一个对称相关的HisB5和两个氯离子配位的锌离子占据。在两个独立二聚体之间的界面处观察到另外两个部分占据的锌离子位点。一个锌离子由一个二聚体的T态HisB5、第二个二聚体的R态HisB5和两个水分子配位;第二个锌离子由T态HisB5的另一种侧链构象和三个水分子配位。一个GluB13侧链的羧基存在两种离散构象,似乎被质子化,因为与第二个羧基或羰基O原子存在短接触。

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